miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23557 5' -58.2 NC_005261.1 + 40722 0.69 0.552006
Target:  5'- -cGAGCCgaaacguuccggcgGCCCCgGCGCccCCAAGGGc -3'
miRNA:   3'- uuCUUGGa-------------CGGGGaCGCGu-GGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 59434 0.7 0.49831
Target:  5'- gGGGAGCCgugagagggaGCCCCUGCG-GCgGGGGAg -3'
miRNA:   3'- -UUCUUGGa---------CGGGGACGCgUGgUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 48809 0.7 0.50809
Target:  5'- gGGGAGCCcggcgGCCgCgcaCGCGCCGAGGAa -3'
miRNA:   3'- -UUCUUGGa----CGGgGac-GCGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 37622 0.7 0.51795
Target:  5'- cGGGACCUGCaCCUGCGCgGCCGcguGGc -3'
miRNA:   3'- uUCUUGGACGgGGACGCG-UGGUu--CCu -5'
23557 5' -58.2 NC_005261.1 + 57870 0.7 0.527886
Target:  5'- cAGAACgUGCCgcuagcgaCUGCGUgACCGAGGAg -3'
miRNA:   3'- uUCUUGgACGGg-------GACGCG-UGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 86310 0.7 0.527886
Target:  5'- cGGGACCaggccgcgGCCgCUGCGCGCCcGGGc -3'
miRNA:   3'- uUCUUGGa-------CGGgGACGCGUGGuUCCu -5'
23557 5' -58.2 NC_005261.1 + 56304 0.7 0.537892
Target:  5'- -uGGGCCUGCUCC--CGCACCucAAGGAg -3'
miRNA:   3'- uuCUUGGACGGGGacGCGUGG--UUCCU- -5'
23557 5' -58.2 NC_005261.1 + 134688 0.7 0.537892
Target:  5'- -cGcGCCcGCCgCgCUGCGCGCCGAGGc -3'
miRNA:   3'- uuCuUGGaCGG-G-GACGCGUGGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 88115 0.69 0.547962
Target:  5'- -uGGACCUGCuggcggCCCUGCGCGgCGcGGGc -3'
miRNA:   3'- uuCUUGGACG------GGGACGCGUgGUuCCU- -5'
23557 5' -58.2 NC_005261.1 + 104486 0.7 0.488615
Target:  5'- -cGGGCCcgGCCCCgGCGCcGCgCGAGGGg -3'
miRNA:   3'- uuCUUGGa-CGGGGaCGCG-UG-GUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 82950 0.71 0.47901
Target:  5'- cAGcGCCcccGCCUCcgGCGCGCCAGGGGg -3'
miRNA:   3'- uUCuUGGa--CGGGGa-CGCGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 119088 0.71 0.469498
Target:  5'- -----gCUGgCCgUGCGCGCCGAGGAg -3'
miRNA:   3'- uucuugGACgGGgACGCGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 35769 0.77 0.216126
Target:  5'- gGAGGuCCgGCgCCUGCGCGCCGAGGc -3'
miRNA:   3'- -UUCUuGGaCGgGGACGCGUGGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 79364 0.75 0.27577
Target:  5'- -cGGACCUGCCCCaGCGCuuCCAcuacgacgugcGGGAg -3'
miRNA:   3'- uuCUUGGACGGGGaCGCGu-GGU-----------UCCU- -5'
23557 5' -58.2 NC_005261.1 + 1780 0.73 0.371967
Target:  5'- uGGGGCUgccgcgUGCCCCUGCGaCGCCcgcGAGGGg -3'
miRNA:   3'- uUCUUGG------ACGGGGACGC-GUGG---UUCCU- -5'
23557 5' -58.2 NC_005261.1 + 128278 0.72 0.423468
Target:  5'- -cGGGCUUGCCCCggGCGgGCCGgcuAGGGu -3'
miRNA:   3'- uuCUUGGACGGGGa-CGCgUGGU---UCCU- -5'
23557 5' -58.2 NC_005261.1 + 128335 0.72 0.423468
Target:  5'- -cGGGCUUGCCCCggGCGgGCCGgcuAGGGu -3'
miRNA:   3'- uuCUUGGACGGGGa-CGCgUGGU---UCCU- -5'
23557 5' -58.2 NC_005261.1 + 128392 0.72 0.423468
Target:  5'- -cGGGCUUGCCCCggGCGgGCCGgcuAGGGu -3'
miRNA:   3'- uuCUUGGACGGGGa-CGCgUGGU---UCCU- -5'
23557 5' -58.2 NC_005261.1 + 19862 0.71 0.432459
Target:  5'- -cGGGCCgcgcGCCCCaGCGCccggccgagagGCCGAGGAg -3'
miRNA:   3'- uuCUUGGa---CGGGGaCGCG-----------UGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 29070 0.71 0.441561
Target:  5'- gGAGAACCUGCCCggccuggugCUGUGgCGCCugccuGGGGc -3'
miRNA:   3'- -UUCUUGGACGGG---------GACGC-GUGGu----UCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.