miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23557 5' -58.2 NC_005261.1 + 92515 0.66 0.76158
Target:  5'- uGGuACaCUGCgucgcggaacCCCUGCGCGgCGAGGGg -3'
miRNA:   3'- uUCuUG-GACG----------GGGACGCGUgGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 133287 0.66 0.77114
Target:  5'- cGGcGCCcGCCUCgugGC-CGCCAAGGAc -3'
miRNA:   3'- uUCuUGGaCGGGGa--CGcGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 34678 0.66 0.77114
Target:  5'- --cGGCaCgggGCCCCUGgGCccggggGCCGAGGAg -3'
miRNA:   3'- uucUUG-Ga--CGGGGACgCG------UGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 78231 0.66 0.742119
Target:  5'- ----cCCUGCCCgUcGCGCugcCCGAGGGu -3'
miRNA:   3'- uucuuGGACGGGgA-CGCGu--GGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 73705 0.66 0.751904
Target:  5'- -cGGACCUGCCCCc-CGa--CGAGGAg -3'
miRNA:   3'- uuCUUGGACGGGGacGCgugGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 69854 0.66 0.742119
Target:  5'- -uGAGCaCaGCCCCgagGCGaCGCCGAGcGAc -3'
miRNA:   3'- uuCUUG-GaCGGGGa--CGC-GUGGUUC-CU- -5'
23557 5' -58.2 NC_005261.1 + 58346 0.66 0.751904
Target:  5'- aAGGAGC--GCgCCCUGUGgGCCGAGGc -3'
miRNA:   3'- -UUCUUGgaCG-GGGACGCgUGGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 32675 0.66 0.77114
Target:  5'- -cGuACCUGgCCCUGCGCGCguGcGGc -3'
miRNA:   3'- uuCuUGGACgGGGACGCGUGguU-CCu -5'
23557 5' -58.2 NC_005261.1 + 47255 0.66 0.76158
Target:  5'- cGAGGACCUGCgCCgGCcCGCCGGcGAa -3'
miRNA:   3'- -UUCUUGGACGgGGaCGcGUGGUUcCU- -5'
23557 5' -58.2 NC_005261.1 + 35693 0.66 0.77114
Target:  5'- --cGGCgaGCCCCgGUGgGCCGGGGGc -3'
miRNA:   3'- uucUUGgaCGGGGaCGCgUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 75153 0.66 0.76158
Target:  5'- gGAGGcguACCcGCCgCUGUGCGCCAGcGAc -3'
miRNA:   3'- -UUCU---UGGaCGGgGACGCGUGGUUcCU- -5'
23557 5' -58.2 NC_005261.1 + 122953 0.66 0.742119
Target:  5'- --cGACCgcgcGCCCCggcgGCGCcGCCGGGGc -3'
miRNA:   3'- uucUUGGa---CGGGGa---CGCG-UGGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 98791 0.66 0.732237
Target:  5'- cGGAGgCUcggGCCCUgcgGaCGCGCCGGGGGa -3'
miRNA:   3'- uUCUUgGA---CGGGGa--C-GCGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 78059 0.66 0.751904
Target:  5'- -cGGGCCcgGCCCCcGCGCcgGCCcAGGc -3'
miRNA:   3'- uuCUUGGa-CGGGGaCGCG--UGGuUCCu -5'
23557 5' -58.2 NC_005261.1 + 33810 0.66 0.76158
Target:  5'- -cGGGCUUGUCUUUGgGCGgCCGGGGGg -3'
miRNA:   3'- uuCUUGGACGGGGACgCGU-GGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 4072 0.66 0.740151
Target:  5'- cGGGAGCagcaGCCCCggguggcgccagGCGCAgcCCAGGGGg -3'
miRNA:   3'- -UUCUUGga--CGGGGa-----------CGCGU--GGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 37947 0.66 0.736201
Target:  5'- uGGGGCCUucugccgcuucgugcGCCaCCgGCGCGCCGacuGGGGg -3'
miRNA:   3'- uUCUUGGA---------------CGG-GGaCGCGUGGU---UCCU- -5'
23557 5' -58.2 NC_005261.1 + 133234 0.66 0.76158
Target:  5'- gGGGGGCCcggggGCCUCgGCGCccuCCGAGGc -3'
miRNA:   3'- -UUCUUGGa----CGGGGaCGCGu--GGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 28717 0.66 0.76158
Target:  5'- gGGGGGCCcggggGCCUCgGCGCccuCCGAGGc -3'
miRNA:   3'- -UUCUUGGa----CGGGGaCGCGu--GGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 130310 0.66 0.76158
Target:  5'- --cAACCaGCCgCUGCaGCGCCAuGGAc -3'
miRNA:   3'- uucUUGGaCGGgGACG-CGUGGUuCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.