miRNA display CGI


Results 1 - 20 of 110 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23557 5' -58.2 NC_005261.1 + 357 0.69 0.568271
Target:  5'- cGGcACCgcugGCCCCgggaGCACCAGGGGc -3'
miRNA:   3'- uUCuUGGa---CGGGGacg-CGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 414 0.68 0.640427
Target:  5'- ---uGCCaGCCCCgcgaGCACCAGGGGc -3'
miRNA:   3'- uucuUGGaCGGGGacg-CGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 1780 0.73 0.371967
Target:  5'- uGGGGCUgccgcgUGCCCCUGCGaCGCCcgcGAGGGg -3'
miRNA:   3'- uUCUUGG------ACGGGGACGC-GUGG---UUCCU- -5'
23557 5' -58.2 NC_005261.1 + 4072 0.66 0.740151
Target:  5'- cGGGAGCagcaGCCCCggguggcgccagGCGCAgcCCAGGGGg -3'
miRNA:   3'- -UUCUUGga--CGGGGa-----------CGCGU--GGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 5469 0.69 0.55809
Target:  5'- -cGAGCa-GCCCCcgcuaucgcGCGCGCCGGGGGg -3'
miRNA:   3'- uuCUUGgaCGGGGa--------CGCGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 8770 0.68 0.640427
Target:  5'- uGGGAACCgugccagcucUGCCCCUcgGCGgcugcagcCGCCGAGGGc -3'
miRNA:   3'- -UUCUUGG----------ACGGGGA--CGC--------GUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 11348 0.68 0.650773
Target:  5'- cGAGGGCCcugcGCUgCUGCGgGCCAuGGAg -3'
miRNA:   3'- -UUCUUGGa---CGGgGACGCgUGGUuCCU- -5'
23557 5' -58.2 NC_005261.1 + 12886 0.79 0.15144
Target:  5'- cGGAGCCUGCuggacgCCCUGCGCGCUgcGGAc -3'
miRNA:   3'- uUCUUGGACG------GGGACGCGUGGuuCCU- -5'
23557 5' -58.2 NC_005261.1 + 15258 0.68 0.661103
Target:  5'- -uGGGCCgcgaucGCCCCggcgGCGCcGCCGGGGc -3'
miRNA:   3'- uuCUUGGa-----CGGGGa---CGCG-UGGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 17046 0.68 0.640427
Target:  5'- -cGGGCCcgGCCCCggccccGUGCACCGAGc- -3'
miRNA:   3'- uuCUUGGa-CGGGGa-----CGCGUGGUUCcu -5'
23557 5' -58.2 NC_005261.1 + 19862 0.71 0.432459
Target:  5'- -cGGGCCgcgcGCCCCaGCGCccggccgagagGCCGAGGAg -3'
miRNA:   3'- uuCUUGGa---CGGGGaCGCG-----------UGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 23761 0.72 0.423468
Target:  5'- -cGGGCUUGCCCCggGCGgGCCGgcuAGGGu -3'
miRNA:   3'- uuCUUGGACGGGGa-CGCgUGGU---UCCU- -5'
23557 5' -58.2 NC_005261.1 + 23818 0.72 0.423468
Target:  5'- -cGGGCUUGCCCCggGCGgGCCGgcuAGGGu -3'
miRNA:   3'- uuCUUGGACGGGGa-CGCgUGGU---UCCU- -5'
23557 5' -58.2 NC_005261.1 + 23875 0.72 0.423468
Target:  5'- -cGGGCUUGCCCCggGCGgGCCGgcuAGGGu -3'
miRNA:   3'- uuCUUGGACGGGGa-CGCgUGGU---UCCU- -5'
23557 5' -58.2 NC_005261.1 + 26646 0.69 0.567251
Target:  5'- cAGGuCCUGCCCCUGgGCcacacgcccggacGCgGAGGGu -3'
miRNA:   3'- uUCUuGGACGGGGACgCG-------------UGgUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 28717 0.66 0.76158
Target:  5'- gGGGGGCCcggggGCCUCgGCGCccuCCGAGGc -3'
miRNA:   3'- -UUCUUGGa----CGGGGaCGCGu--GGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 29070 0.71 0.441561
Target:  5'- gGAGAACCUGCCCggccuggugCUGUGgCGCCugccuGGGGc -3'
miRNA:   3'- -UUCUUGGACGGG---------GACGC-GUGGu----UCCU- -5'
23557 5' -58.2 NC_005261.1 + 29105 0.67 0.712215
Target:  5'- cGGGGACCgacGCcgaggggagCCCUG-GCGCCGGGGGg -3'
miRNA:   3'- -UUCUUGGa--CG---------GGGACgCGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 30170 0.7 0.537892
Target:  5'- -cGcGCCcGCCgCgCUGCGCGCCGAGGc -3'
miRNA:   3'- uuCuUGGaCGG-G-GACGCGUGGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 31815 0.69 0.578497
Target:  5'- -uGGACCgcgGCCCgCUGCaGCGCCGcgcGGAu -3'
miRNA:   3'- uuCUUGGa--CGGG-GACG-CGUGGUu--CCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.