miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23557 5' -58.2 NC_005261.1 + 138097 0.68 0.640427
Target:  5'- ---uGCCaGCCCCgcgaGCACCAGGGGc -3'
miRNA:   3'- uucuUGGaCGGGGacg-CGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 138040 0.69 0.568271
Target:  5'- cGGcACCgcugGCCCCgggaGCACCAGGGGc -3'
miRNA:   3'- uUCuUGGa---CGGGGacg-CGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 136387 0.69 0.588764
Target:  5'- -cGGGCCcgGCgCCUucgcGCGCGCCGAGGc -3'
miRNA:   3'- uuCUUGGa-CGgGGA----CGCGUGGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 135553 1.06 0.002034
Target:  5'- cAAGAACCUGCCCCUGCGCACCAAGGAc -3'
miRNA:   3'- -UUCUUGGACGGGGACGCGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 134688 0.7 0.537892
Target:  5'- -cGcGCCcGCCgCgCUGCGCGCCGAGGc -3'
miRNA:   3'- uuCuUGGaCGG-G-GACGCGUGGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 133623 0.67 0.712215
Target:  5'- cGGGGACCgacGCcgaggggagCCCUG-GCGCCGGGGGg -3'
miRNA:   3'- -UUCUUGGa--CG---------GGGACgCGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 133287 0.66 0.77114
Target:  5'- cGGcGCCcGCCUCgugGC-CGCCAAGGAc -3'
miRNA:   3'- uUCuUGGaCGGGGa--CGcGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 133234 0.66 0.76158
Target:  5'- gGGGGGCCcggggGCCUCgGCGCccuCCGAGGc -3'
miRNA:   3'- -UUCUUGGa----CGGGGaCGCGu--GGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 131641 0.75 0.269257
Target:  5'- cGAGGACCgacggGCCCCccggGCGCACCGucugcgAGGGu -3'
miRNA:   3'- -UUCUUGGa----CGGGGa---CGCGUGGU------UCCU- -5'
23557 5' -58.2 NC_005261.1 + 131163 0.69 0.567251
Target:  5'- cAGGuCCUGCCCCUGgGCcacacgcccggacGCgGAGGGu -3'
miRNA:   3'- uUCUuGGACGGGGACgCG-------------UGgUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 130310 0.66 0.76158
Target:  5'- --cAACCaGCCgCUGCaGCGCCAuGGAc -3'
miRNA:   3'- uucUUGGaCGGgGACG-CGUGGUuCCU- -5'
23557 5' -58.2 NC_005261.1 + 128392 0.72 0.423468
Target:  5'- -cGGGCUUGCCCCggGCGgGCCGgcuAGGGu -3'
miRNA:   3'- uuCUUGGACGGGGa-CGCgUGGU---UCCU- -5'
23557 5' -58.2 NC_005261.1 + 128335 0.72 0.423468
Target:  5'- -cGGGCUUGCCCCggGCGgGCCGgcuAGGGu -3'
miRNA:   3'- uuCUUGGACGGGGa-CGCgUGGU---UCCU- -5'
23557 5' -58.2 NC_005261.1 + 128278 0.72 0.423468
Target:  5'- -cGGGCUUGCCCCggGCGgGCCGgcuAGGGu -3'
miRNA:   3'- uuCUUGGACGGGGa-CGCgUGGU---UCCU- -5'
23557 5' -58.2 NC_005261.1 + 127676 0.69 0.599062
Target:  5'- cGGGACggcggcggccgCUGCCCCgGCgGCGCCgGAGGAg -3'
miRNA:   3'- uUCUUG-----------GACGGGGaCG-CGUGG-UUCCU- -5'
23557 5' -58.2 NC_005261.1 + 127394 0.72 0.405827
Target:  5'- gAGGAGCCcgGCgCCCU-CGCACaCGAGGAu -3'
miRNA:   3'- -UUCUUGGa-CG-GGGAcGCGUG-GUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 123546 0.68 0.609385
Target:  5'- -cGAGCgUGCCCUcGCGCACCGu--- -3'
miRNA:   3'- uuCUUGgACGGGGaCGCGUGGUuccu -5'
23557 5' -58.2 NC_005261.1 + 122953 0.66 0.742119
Target:  5'- --cGACCgcgcGCCCCggcgGCGCcGCCGGGGc -3'
miRNA:   3'- uucUUGGa---CGGGGa---CGCG-UGGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 120377 0.66 0.732237
Target:  5'- cGGcGCCgcGCCCUcGCGCACCGAGc- -3'
miRNA:   3'- uUCuUGGa-CGGGGaCGCGUGGUUCcu -5'
23557 5' -58.2 NC_005261.1 + 120189 0.66 0.742119
Target:  5'- ---cACCcGCCcaaCCUGCGCugCGAGGu -3'
miRNA:   3'- uucuUGGaCGG---GGACGCGugGUUCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.