Results 1 - 20 of 110 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23557 | 5' | -58.2 | NC_005261.1 | + | 135553 | 1.06 | 0.002034 |
Target: 5'- cAAGAACCUGCCCCUGCGCACCAAGGAc -3' miRNA: 3'- -UUCUUGGACGGGGACGCGUGGUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 33730 | 0.82 | 0.094214 |
Target: 5'- uGGGGGCCUGCCCCUcGCGCggcGCCGGGGc -3' miRNA: 3'- -UUCUUGGACGGGGA-CGCG---UGGUUCCu -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 12886 | 0.79 | 0.15144 |
Target: 5'- cGGAGCCUGCuggacgCCCUGCGCGCUgcGGAc -3' miRNA: 3'- uUCUUGGACG------GGGACGCGUGGuuCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 34430 | 0.77 | 0.210811 |
Target: 5'- -cGcGCCUGCCCCUGCugccgaacGCGCCGGGGc -3' miRNA: 3'- uuCuUGGACGGGGACG--------CGUGGUUCCu -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 35769 | 0.77 | 0.216126 |
Target: 5'- gGAGGuCCgGCgCCUGCGCGCCGAGGc -3' miRNA: 3'- -UUCUuGGaCGgGGACGCGUGGUUCCu -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 131641 | 0.75 | 0.269257 |
Target: 5'- cGAGGACCgacggGCCCCccggGCGCACCGucugcgAGGGu -3' miRNA: 3'- -UUCUUGGa----CGGGGa---CGCGUGGU------UCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 79364 | 0.75 | 0.27577 |
Target: 5'- -cGGACCUGCCCCaGCGCuuCCAcuacgacgugcGGGAg -3' miRNA: 3'- uuCUUGGACGGGGaCGCGu-GGU-----------UCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 118523 | 0.73 | 0.344738 |
Target: 5'- cGAGGcgcCCUGCCCCgccgaccccugcgGCGCGCgCGAGGAc -3' miRNA: 3'- -UUCUu--GGACGGGGa------------CGCGUG-GUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 1780 | 0.73 | 0.371967 |
Target: 5'- uGGGGCUgccgcgUGCCCCUGCGaCGCCcgcGAGGGg -3' miRNA: 3'- uUCUUGG------ACGGGGACGC-GUGG---UUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 119846 | 0.73 | 0.383598 |
Target: 5'- cGGcAGCCUGCCCCugaccgUGCGCucccugaccgccgcaGCCGAGGGc -3' miRNA: 3'- uUC-UUGGACGGGG------ACGCG---------------UGGUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 127394 | 0.72 | 0.405827 |
Target: 5'- gAGGAGCCcgGCgCCCU-CGCACaCGAGGAu -3' miRNA: 3'- -UUCUUGGa-CG-GGGAcGCGUG-GUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 61887 | 0.72 | 0.405827 |
Target: 5'- uGGGcGCCUucucGCCCgUGCGCACCAccgAGGGc -3' miRNA: 3'- -UUCuUGGA----CGGGgACGCGUGGU---UCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 23818 | 0.72 | 0.423468 |
Target: 5'- -cGGGCUUGCCCCggGCGgGCCGgcuAGGGu -3' miRNA: 3'- uuCUUGGACGGGGa-CGCgUGGU---UCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 23875 | 0.72 | 0.423468 |
Target: 5'- -cGGGCUUGCCCCggGCGgGCCGgcuAGGGu -3' miRNA: 3'- uuCUUGGACGGGGa-CGCgUGGU---UCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 23761 | 0.72 | 0.423468 |
Target: 5'- -cGGGCUUGCCCCggGCGgGCCGgcuAGGGu -3' miRNA: 3'- uuCUUGGACGGGGa-CGCgUGGU---UCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 128278 | 0.72 | 0.423468 |
Target: 5'- -cGGGCUUGCCCCggGCGgGCCGgcuAGGGu -3' miRNA: 3'- uuCUUGGACGGGGa-CGCgUGGU---UCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 128392 | 0.72 | 0.423468 |
Target: 5'- -cGGGCUUGCCCCggGCGgGCCGgcuAGGGu -3' miRNA: 3'- uuCUUGGACGGGGa-CGCgUGGU---UCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 128335 | 0.72 | 0.423468 |
Target: 5'- -cGGGCUUGCCCCggGCGgGCCGgcuAGGGu -3' miRNA: 3'- uuCUUGGACGGGGa-CGCgUGGU---UCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 19862 | 0.71 | 0.432459 |
Target: 5'- -cGGGCCgcgcGCCCCaGCGCccggccgagagGCCGAGGAg -3' miRNA: 3'- uuCUUGGa---CGGGGaCGCG-----------UGGUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 29070 | 0.71 | 0.441561 |
Target: 5'- gGAGAACCUGCCCggccuggugCUGUGgCGCCugccuGGGGc -3' miRNA: 3'- -UUCUUGGACGGG---------GACGC-GUGGu----UCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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