Results 1 - 20 of 110 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23557 | 5' | -58.2 | NC_005261.1 | + | 35693 | 0.66 | 0.77114 |
Target: 5'- --cGGCgaGCCCCgGUGgGCCGGGGGc -3' miRNA: 3'- uucUUGgaCGGGGaCGCgUGGUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 34678 | 0.66 | 0.77114 |
Target: 5'- --cGGCaCgggGCCCCUGgGCccggggGCCGAGGAg -3' miRNA: 3'- uucUUG-Ga--CGGGGACgCG------UGGUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 32675 | 0.66 | 0.77114 |
Target: 5'- -cGuACCUGgCCCUGCGCGCguGcGGc -3' miRNA: 3'- uuCuUGGACgGGGACGCGUGguU-CCu -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 133287 | 0.66 | 0.77114 |
Target: 5'- cGGcGCCcGCCUCgugGC-CGCCAAGGAc -3' miRNA: 3'- uUCuUGGaCGGGGa--CGcGUGGUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 33810 | 0.66 | 0.76158 |
Target: 5'- -cGGGCUUGUCUUUGgGCGgCCGGGGGg -3' miRNA: 3'- uuCUUGGACGGGGACgCGU-GGUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 75153 | 0.66 | 0.76158 |
Target: 5'- gGAGGcguACCcGCCgCUGUGCGCCAGcGAc -3' miRNA: 3'- -UUCU---UGGaCGGgGACGCGUGGUUcCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 133234 | 0.66 | 0.76158 |
Target: 5'- gGGGGGCCcggggGCCUCgGCGCccuCCGAGGc -3' miRNA: 3'- -UUCUUGGa----CGGGGaCGCGu--GGUUCCu -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 28717 | 0.66 | 0.76158 |
Target: 5'- gGGGGGCCcggggGCCUCgGCGCccuCCGAGGc -3' miRNA: 3'- -UUCUUGGa----CGGGGaCGCGu--GGUUCCu -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 47255 | 0.66 | 0.76158 |
Target: 5'- cGAGGACCUGCgCCgGCcCGCCGGcGAa -3' miRNA: 3'- -UUCUUGGACGgGGaCGcGUGGUUcCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 130310 | 0.66 | 0.76158 |
Target: 5'- --cAACCaGCCgCUGCaGCGCCAuGGAc -3' miRNA: 3'- uucUUGGaCGGgGACG-CGUGGUuCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 92515 | 0.66 | 0.76158 |
Target: 5'- uGGuACaCUGCgucgcggaacCCCUGCGCGgCGAGGGg -3' miRNA: 3'- uUCuUG-GACG----------GGGACGCGUgGUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 90055 | 0.66 | 0.751904 |
Target: 5'- cGGAcaGCCagcggcGCCCCgcGgGCGCCGAGGGc -3' miRNA: 3'- uUCU--UGGa-----CGGGGa-CgCGUGGUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 36580 | 0.66 | 0.751904 |
Target: 5'- cGGGGGCCcGCCgCgGC-CACCGGGGGg -3' miRNA: 3'- -UUCUUGGaCGGgGaCGcGUGGUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 73705 | 0.66 | 0.751904 |
Target: 5'- -cGGACCUGCCCCc-CGa--CGAGGAg -3' miRNA: 3'- uuCUUGGACGGGGacGCgugGUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 58346 | 0.66 | 0.751904 |
Target: 5'- aAGGAGC--GCgCCCUGUGgGCCGAGGc -3' miRNA: 3'- -UUCUUGgaCG-GGGACGCgUGGUUCCu -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 78059 | 0.66 | 0.751904 |
Target: 5'- -cGGGCCcgGCCCCcGCGCcgGCCcAGGc -3' miRNA: 3'- uuCUUGGa-CGGGGaCGCG--UGGuUCCu -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 78231 | 0.66 | 0.742119 |
Target: 5'- ----cCCUGCCCgUcGCGCugcCCGAGGGu -3' miRNA: 3'- uucuuGGACGGGgA-CGCGu--GGUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 122953 | 0.66 | 0.742119 |
Target: 5'- --cGACCgcgcGCCCCggcgGCGCcGCCGGGGc -3' miRNA: 3'- uucUUGGa---CGGGGa---CGCG-UGGUUCCu -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 58769 | 0.66 | 0.742119 |
Target: 5'- cGAGAGC--GCCCCcaGCGCGCCGgccagcgcgcgcAGGAa -3' miRNA: 3'- -UUCUUGgaCGGGGa-CGCGUGGU------------UCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 69854 | 0.66 | 0.742119 |
Target: 5'- -uGAGCaCaGCCCCgagGCGaCGCCGAGcGAc -3' miRNA: 3'- uuCUUG-GaCGGGGa--CGC-GUGGUUC-CU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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