miRNA display CGI


Results 21 - 40 of 110 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23557 5' -58.2 NC_005261.1 + 58769 0.66 0.742119
Target:  5'- cGAGAGC--GCCCCcaGCGCGCCGgccagcgcgcgcAGGAa -3'
miRNA:   3'- -UUCUUGgaCGGGGa-CGCGUGGU------------UCCU- -5'
23557 5' -58.2 NC_005261.1 + 69854 0.66 0.742119
Target:  5'- -uGAGCaCaGCCCCgagGCGaCGCCGAGcGAc -3'
miRNA:   3'- uuCUUG-GaCGGGGa--CGC-GUGGUUC-CU- -5'
23557 5' -58.2 NC_005261.1 + 78231 0.66 0.742119
Target:  5'- ----cCCUGCCCgUcGCGCugcCCGAGGGu -3'
miRNA:   3'- uucuuGGACGGGgA-CGCGu--GGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 4072 0.66 0.740151
Target:  5'- cGGGAGCagcaGCCCCggguggcgccagGCGCAgcCCAGGGGg -3'
miRNA:   3'- -UUCUUGga--CGGGGa-----------CGCGU--GGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 37947 0.66 0.736201
Target:  5'- uGGGGCCUucugccgcuucgugcGCCaCCgGCGCGCCGacuGGGGg -3'
miRNA:   3'- uUCUUGGA---------------CGG-GGaCGCGUGGU---UCCU- -5'
23557 5' -58.2 NC_005261.1 + 120377 0.66 0.732237
Target:  5'- cGGcGCCgcGCCCUcGCGCACCGAGc- -3'
miRNA:   3'- uUCuUGGa-CGGGGaCGCGUGGUUCcu -5'
23557 5' -58.2 NC_005261.1 + 107356 0.66 0.732237
Target:  5'- -cGGACCUGCgUCgucgUGgGCGCCGGGGc -3'
miRNA:   3'- uuCUUGGACGgGG----ACgCGUGGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 74646 0.66 0.732237
Target:  5'- uGGGACgaGCCCgUcuucGCGCagGCCGGGGAc -3'
miRNA:   3'- uUCUUGgaCGGGgA----CGCG--UGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 98791 0.66 0.732237
Target:  5'- cGGAGgCUcggGCCCUgcgGaCGCGCCGGGGGa -3'
miRNA:   3'- uUCUUgGA---CGGGGa--C-GCGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 83540 0.67 0.722265
Target:  5'- -cGAGCUgcgGCCUC-GCGCACCu-GGAc -3'
miRNA:   3'- uuCUUGGa--CGGGGaCGCGUGGuuCCU- -5'
23557 5' -58.2 NC_005261.1 + 79158 0.67 0.722265
Target:  5'- cGAGcACCagcaGCCCCguggccaGCGCGCCgAAGGGg -3'
miRNA:   3'- -UUCuUGGa---CGGGGa------CGCGUGG-UUCCU- -5'
23557 5' -58.2 NC_005261.1 + 29105 0.67 0.712215
Target:  5'- cGGGGACCgacGCcgaggggagCCCUG-GCGCCGGGGGg -3'
miRNA:   3'- -UUCUUGGa--CG---------GGGACgCGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 133623 0.67 0.712215
Target:  5'- cGGGGACCgacGCcgaggggagCCCUG-GCGCCGGGGGg -3'
miRNA:   3'- -UUCUUGGa--CG---------GGGACgCGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 44281 0.67 0.712215
Target:  5'- cGGGGCCcGCCgCCagcgGCGgGCCAGGGc -3'
miRNA:   3'- uUCUUGGaCGG-GGa---CGCgUGGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 93964 0.67 0.712215
Target:  5'- -cGGGCCccGCCCCcccGCGCGCCGcGGc -3'
miRNA:   3'- uuCUUGGa-CGGGGa--CGCGUGGUuCCu -5'
23557 5' -58.2 NC_005261.1 + 49366 0.67 0.702094
Target:  5'- gGAGAGgCUGUCCCgcgagGCGCgGCCcAGGu -3'
miRNA:   3'- -UUCUUgGACGGGGa----CGCG-UGGuUCCu -5'
23557 5' -58.2 NC_005261.1 + 35109 0.67 0.691913
Target:  5'- gGAGAACCcggGCgCgCUG-GCGCCGGGGGc -3'
miRNA:   3'- -UUCUUGGa--CGgG-GACgCGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 78533 0.67 0.691913
Target:  5'- -cGggUCUGCCCggaGCGCgugcugGCCGAGGGc -3'
miRNA:   3'- uuCuuGGACGGGga-CGCG------UGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 99512 0.67 0.671409
Target:  5'- cGAGGGCCcGCCCgUugcGUGCACCGucgAGGGc -3'
miRNA:   3'- -UUCUUGGaCGGGgA---CGCGUGGU---UCCU- -5'
23557 5' -58.2 NC_005261.1 + 62834 0.68 0.661103
Target:  5'- -cGGGCC-GCgCCCUcgucgauggcGCGCGCCAGGGc -3'
miRNA:   3'- uuCUUGGaCG-GGGA----------CGCGUGGUUCCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.