miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23557 5' -58.2 NC_005261.1 + 31870 0.69 0.588764
Target:  5'- -cGGGCCcgGCgCCUucgcGCGCGCCGAGGc -3'
miRNA:   3'- uuCUUGGa-CGgGGA----CGCGUGGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 32675 0.66 0.77114
Target:  5'- -cGuACCUGgCCCUGCGCGCguGcGGc -3'
miRNA:   3'- uuCuUGGACgGGGACGCGUGguU-CCu -5'
23557 5' -58.2 NC_005261.1 + 33523 0.69 0.568271
Target:  5'- cGGcACCgcugGCCCCgggaGCACCAGGGGc -3'
miRNA:   3'- uUCuUGGa---CGGGGacg-CGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 33580 0.68 0.640427
Target:  5'- ---uGCCaGCCCCgcgaGCACCAGGGGc -3'
miRNA:   3'- uucuUGGaCGGGGacg-CGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 33730 0.82 0.094214
Target:  5'- uGGGGGCCUGCCCCUcGCGCggcGCCGGGGc -3'
miRNA:   3'- -UUCUUGGACGGGGA-CGCG---UGGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 33810 0.66 0.76158
Target:  5'- -cGGGCUUGUCUUUGgGCGgCCGGGGGg -3'
miRNA:   3'- uuCUUGGACGGGGACgCGU-GGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 34430 0.77 0.210811
Target:  5'- -cGcGCCUGCCCCUGCugccgaacGCGCCGGGGc -3'
miRNA:   3'- uuCuUGGACGGGGACG--------CGUGGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 34678 0.66 0.77114
Target:  5'- --cGGCaCgggGCCCCUGgGCccggggGCCGAGGAg -3'
miRNA:   3'- uucUUG-Ga--CGGGGACgCG------UGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 34914 0.69 0.568271
Target:  5'- uGGAcGCgCUGCUgCUGCGCugCAGGGc -3'
miRNA:   3'- uUCU-UG-GACGGgGACGCGugGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 35109 0.67 0.691913
Target:  5'- gGAGAACCcggGCgCgCUG-GCGCCGGGGGc -3'
miRNA:   3'- -UUCUUGGa--CGgG-GACgCGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 35693 0.66 0.77114
Target:  5'- --cGGCgaGCCCCgGUGgGCCGGGGGc -3'
miRNA:   3'- uucUUGgaCGGGGaCGCgUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 35769 0.77 0.216126
Target:  5'- gGAGGuCCgGCgCCUGCGCGCCGAGGc -3'
miRNA:   3'- -UUCUuGGaCGgGGACGCGUGGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 36580 0.66 0.751904
Target:  5'- cGGGGGCCcGCCgCgGC-CACCGGGGGg -3'
miRNA:   3'- -UUCUUGGaCGGgGaCGcGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 37622 0.7 0.51795
Target:  5'- cGGGACCUGCaCCUGCGCgGCCGcguGGc -3'
miRNA:   3'- uUCUUGGACGgGGACGCG-UGGUu--CCu -5'
23557 5' -58.2 NC_005261.1 + 37947 0.66 0.736201
Target:  5'- uGGGGCCUucugccgcuucgugcGCCaCCgGCGCGCCGacuGGGGg -3'
miRNA:   3'- uUCUUGGA---------------CGG-GGaCGCGUGGU---UCCU- -5'
23557 5' -58.2 NC_005261.1 + 39270 0.69 0.588764
Target:  5'- cGGGACCUGCCgagCCUGaCGCucgacuaCGAGGAc -3'
miRNA:   3'- uUCUUGGACGG---GGAC-GCGug-----GUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 39568 0.68 0.619725
Target:  5'- cGGAGCCcGCCCUcgccugGgGgGCCGAGGAg -3'
miRNA:   3'- uUCUUGGaCGGGGa-----CgCgUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 40722 0.69 0.552006
Target:  5'- -cGAGCCgaaacguuccggcgGCCCCgGCGCccCCAAGGGc -3'
miRNA:   3'- uuCUUGGa-------------CGGGGaCGCGu-GGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 44281 0.67 0.712215
Target:  5'- cGGGGCCcGCCgCCagcgGCGgGCCAGGGc -3'
miRNA:   3'- uUCUUGGaCGG-GGa---CGCgUGGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 44954 0.71 0.441561
Target:  5'- gGAGAGCCUGCUgCgggacGCGCGCgAGGGc -3'
miRNA:   3'- -UUCUUGGACGGgGa----CGCGUGgUUCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.