miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23557 5' -58.2 NC_005261.1 + 119846 0.73 0.383598
Target:  5'- cGGcAGCCUGCCCCugaccgUGCGCucccugaccgccgcaGCCGAGGGc -3'
miRNA:   3'- uUC-UUGGACGGGG------ACGCG---------------UGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 119088 0.71 0.469498
Target:  5'- -----gCUGgCCgUGCGCGCCGAGGAg -3'
miRNA:   3'- uucuugGACgGGgACGCGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 118523 0.73 0.344738
Target:  5'- cGAGGcgcCCUGCCCCgccgaccccugcgGCGCGCgCGAGGAc -3'
miRNA:   3'- -UUCUu--GGACGGGGa------------CGCGUG-GUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 117609 0.68 0.630076
Target:  5'- -cGGGCCggcaGUCCCggaUGCGgGCCAGGGGc -3'
miRNA:   3'- uuCUUGGa---CGGGG---ACGCgUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 113287 0.68 0.640427
Target:  5'- uGGGAACCgugccagcucUGCCCCUcgGCGgcugcagcCGCCGAGGGc -3'
miRNA:   3'- -UUCUUGG----------ACGGGGA--CGC--------GUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 112905 0.7 0.51795
Target:  5'- --cAACCUGCCgCgCUGCGUGCgCGAGGGc -3'
miRNA:   3'- uucUUGGACGG-G-GACGCGUG-GUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 109986 0.69 0.55809
Target:  5'- -cGAGCa-GCCCCcgcuaucgcGCGCGCCGGGGGg -3'
miRNA:   3'- uuCUUGgaCGGGGa--------CGCGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 107356 0.66 0.732237
Target:  5'- -cGGACCUGCgUCgucgUGgGCGCCGGGGc -3'
miRNA:   3'- uuCUUGGACGgGG----ACgCGUGGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 104486 0.7 0.488615
Target:  5'- -cGGGCCcgGCCCCgGCGCcGCgCGAGGGg -3'
miRNA:   3'- uuCUUGGa-CGGGGaCGCG-UG-GUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 103839 0.69 0.555046
Target:  5'- gAGGAGCUcGCCCUUGCGCGCgAgccgcggcggcggcGGGGc -3'
miRNA:   3'- -UUCUUGGaCGGGGACGCGUGgU--------------UCCU- -5'
23557 5' -58.2 NC_005261.1 + 101822 0.69 0.588764
Target:  5'- ---cGCCUGCCCCaucccgcuaUGUGgGCCAGGGc -3'
miRNA:   3'- uucuUGGACGGGG---------ACGCgUGGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 99512 0.67 0.671409
Target:  5'- cGAGGGCCcGCCCgUugcGUGCACCGucgAGGGc -3'
miRNA:   3'- -UUCUUGGaCGGGgA---CGCGUGGU---UCCU- -5'
23557 5' -58.2 NC_005261.1 + 98791 0.66 0.732237
Target:  5'- cGGAGgCUcggGCCCUgcgGaCGCGCCGGGGGa -3'
miRNA:   3'- uUCUUgGA---CGGGGa--C-GCGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 97428 0.7 0.488615
Target:  5'- -cGGGCCUGCCCUUGgGCGCgGgucuGGGc -3'
miRNA:   3'- uuCUUGGACGGGGACgCGUGgUu---CCU- -5'
23557 5' -58.2 NC_005261.1 + 93964 0.67 0.712215
Target:  5'- -cGGGCCccGCCCCcccGCGCGCCGcGGc -3'
miRNA:   3'- uuCUUGGa-CGGGGa--CGCGUGGUuCCu -5'
23557 5' -58.2 NC_005261.1 + 93442 0.69 0.594939
Target:  5'- uGAGGGCCguggccagcaccgGCCCCaGCGCgguGCCGGGGc -3'
miRNA:   3'- -UUCUUGGa------------CGGGGaCGCG---UGGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 92515 0.66 0.76158
Target:  5'- uGGuACaCUGCgucgcggaacCCCUGCGCGgCGAGGGg -3'
miRNA:   3'- uUCuUG-GACG----------GGGACGCGUgGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 90055 0.66 0.751904
Target:  5'- cGGAcaGCCagcggcGCCCCgcGgGCGCCGAGGGc -3'
miRNA:   3'- uUCU--UGGa-----CGGGGa-CgCGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 90011 0.68 0.609385
Target:  5'- ---cACCUGCCUgCUGCGCcugGCCcGGGAg -3'
miRNA:   3'- uucuUGGACGGG-GACGCG---UGGuUCCU- -5'
23557 5' -58.2 NC_005261.1 + 88115 0.69 0.547962
Target:  5'- -uGGACCUGCuggcggCCCUGCGCGgCGcGGGc -3'
miRNA:   3'- uuCUUGGACG------GGGACGCGUgGUuCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.