Results 41 - 60 of 110 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23557 | 5' | -58.2 | NC_005261.1 | + | 86310 | 0.7 | 0.527886 |
Target: 5'- cGGGACCaggccgcgGCCgCUGCGCGCCcGGGc -3' miRNA: 3'- uUCUUGGa-------CGGgGACGCGUGGuUCCu -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 83540 | 0.67 | 0.722265 |
Target: 5'- -cGAGCUgcgGCCUC-GCGCACCu-GGAc -3' miRNA: 3'- uuCUUGGa--CGGGGaCGCGUGGuuCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 82990 | 0.66 | 0.742119 |
Target: 5'- cGGAGgCgGCCgCCUcGCGCACCGAGc- -3' miRNA: 3'- uUCUUgGaCGG-GGA-CGCGUGGUUCcu -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 82950 | 0.71 | 0.47901 |
Target: 5'- cAGcGCCcccGCCUCcgGCGCGCCAGGGGg -3' miRNA: 3'- uUCuUGGa--CGGGGa-CGCGUGGUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 79364 | 0.75 | 0.27577 |
Target: 5'- -cGGACCUGCCCCaGCGCuuCCAcuacgacgugcGGGAg -3' miRNA: 3'- uuCUUGGACGGGGaCGCGu-GGU-----------UCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 79158 | 0.67 | 0.722265 |
Target: 5'- cGAGcACCagcaGCCCCguggccaGCGCGCCgAAGGGg -3' miRNA: 3'- -UUCuUGGa---CGGGGa------CGCGUGG-UUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 78533 | 0.67 | 0.691913 |
Target: 5'- -cGggUCUGCCCggaGCGCgugcugGCCGAGGGc -3' miRNA: 3'- uuCuuGGACGGGga-CGCG------UGGUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 78231 | 0.66 | 0.742119 |
Target: 5'- ----cCCUGCCCgUcGCGCugcCCGAGGGu -3' miRNA: 3'- uucuuGGACGGGgA-CGCGu--GGUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 78059 | 0.66 | 0.751904 |
Target: 5'- -cGGGCCcgGCCCCcGCGCcgGCCcAGGc -3' miRNA: 3'- uuCUUGGa-CGGGGaCGCG--UGGuUCCu -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 75694 | 0.71 | 0.441561 |
Target: 5'- cGAGGACCagaGCCUgCUGCGCGCCAcGGu -3' miRNA: 3'- -UUCUUGGa--CGGG-GACGCGUGGUuCCu -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 75153 | 0.66 | 0.76158 |
Target: 5'- gGAGGcguACCcGCCgCUGUGCGCCAGcGAc -3' miRNA: 3'- -UUCU---UGGaCGGgGACGCGUGGUUcCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 74646 | 0.66 | 0.732237 |
Target: 5'- uGGGACgaGCCCgUcuucGCGCagGCCGGGGAc -3' miRNA: 3'- uUCUUGgaCGGGgA----CGCG--UGGUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 73705 | 0.66 | 0.751904 |
Target: 5'- -cGGACCUGCCCCc-CGa--CGAGGAg -3' miRNA: 3'- uuCUUGGACGGGGacGCgugGUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 69854 | 0.66 | 0.742119 |
Target: 5'- -uGAGCaCaGCCCCgagGCGaCGCCGAGcGAc -3' miRNA: 3'- uuCUUG-GaCGGGGa--CGC-GUGGUUC-CU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 69005 | 0.68 | 0.609385 |
Target: 5'- -cGAACC-GCCCCaGCGCGCaCAgcucccggAGGAc -3' miRNA: 3'- uuCUUGGaCGGGGaCGCGUG-GU--------UCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 62834 | 0.68 | 0.661103 |
Target: 5'- -cGGGCC-GCgCCCUcgucgauggcGCGCGCCAGGGc -3' miRNA: 3'- uuCUUGGaCG-GGGA----------CGCGUGGUUCCu -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 61887 | 0.72 | 0.405827 |
Target: 5'- uGGGcGCCUucucGCCCgUGCGCACCAccgAGGGc -3' miRNA: 3'- -UUCuUGGA----CGGGgACGCGUGGU---UCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 59434 | 0.7 | 0.49831 |
Target: 5'- gGGGAGCCgugagagggaGCCCCUGCG-GCgGGGGAg -3' miRNA: 3'- -UUCUUGGa---------CGGGGACGCgUGgUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 58769 | 0.66 | 0.742119 |
Target: 5'- cGAGAGC--GCCCCcaGCGCGCCGgccagcgcgcgcAGGAa -3' miRNA: 3'- -UUCUUGgaCGGGGa-CGCGUGGU------------UCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 58346 | 0.66 | 0.751904 |
Target: 5'- aAGGAGC--GCgCCCUGUGgGCCGAGGc -3' miRNA: 3'- -UUCUUGgaCG-GGGACGCgUGGUUCCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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