miRNA display CGI


Results 41 - 60 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23557 5' -58.2 NC_005261.1 + 62834 0.68 0.661103
Target:  5'- -cGGGCC-GCgCCCUcgucgauggcGCGCGCCAGGGc -3'
miRNA:   3'- uuCUUGGaCG-GGGA----------CGCGUGGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 50575 0.68 0.661103
Target:  5'- -cGGugCUGCCCCuggUGCGCgggcucACCGuGGAg -3'
miRNA:   3'- uuCUugGACGGGG---ACGCG------UGGUuCCU- -5'
23557 5' -58.2 NC_005261.1 + 11348 0.68 0.650773
Target:  5'- cGAGGGCCcugcGCUgCUGCGgGCCAuGGAg -3'
miRNA:   3'- -UUCUUGGa---CGGgGACGCgUGGUuCCU- -5'
23557 5' -58.2 NC_005261.1 + 8770 0.68 0.640427
Target:  5'- uGGGAACCgugccagcucUGCCCCUcgGCGgcugcagcCGCCGAGGGc -3'
miRNA:   3'- -UUCUUGG----------ACGGGGA--CGC--------GUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 113287 0.68 0.640427
Target:  5'- uGGGAACCgugccagcucUGCCCCUcgGCGgcugcagcCGCCGAGGGc -3'
miRNA:   3'- -UUCUUGG----------ACGGGGA--CGC--------GUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 33580 0.68 0.640427
Target:  5'- ---uGCCaGCCCCgcgaGCACCAGGGGc -3'
miRNA:   3'- uucuUGGaCGGGGacg-CGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 414 0.68 0.640427
Target:  5'- ---uGCCaGCCCCgcgaGCACCAGGGGc -3'
miRNA:   3'- uucuUGGaCGGGGacg-CGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 17046 0.68 0.640427
Target:  5'- -cGGGCCcgGCCCCggccccGUGCACCGAGc- -3'
miRNA:   3'- uuCUUGGa-CGGGGa-----CGCGUGGUUCcu -5'
23557 5' -58.2 NC_005261.1 + 57666 0.68 0.640427
Target:  5'- aAGGAGCCUGUCUcgcggaacuuuCUGCGCACCcAGc- -3'
miRNA:   3'- -UUCUUGGACGGG-----------GACGCGUGGuUCcu -5'
23557 5' -58.2 NC_005261.1 + 138097 0.68 0.640427
Target:  5'- ---uGCCaGCCCCgcgaGCACCAGGGGc -3'
miRNA:   3'- uucuUGGaCGGGGacg-CGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 117609 0.68 0.630076
Target:  5'- -cGGGCCggcaGUCCCggaUGCGgGCCAGGGGc -3'
miRNA:   3'- uuCUUGGa---CGGGG---ACGCgUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 52012 0.68 0.619725
Target:  5'- cGGcACCggcUGCCCCgguucgGCGCGCCGAcgcGGAg -3'
miRNA:   3'- uUCuUGG---ACGGGGa-----CGCGUGGUU---CCU- -5'
23557 5' -58.2 NC_005261.1 + 39568 0.68 0.619725
Target:  5'- cGGAGCCcGCCCUcgccugGgGgGCCGAGGAg -3'
miRNA:   3'- uUCUUGGaCGGGGa-----CgCgUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 123546 0.68 0.609385
Target:  5'- -cGAGCgUGCCCUcGCGCACCGu--- -3'
miRNA:   3'- uuCUUGgACGGGGaCGCGUGGUuccu -5'
23557 5' -58.2 NC_005261.1 + 90011 0.68 0.609385
Target:  5'- ---cACCUGCCUgCUGCGCcugGCCcGGGAg -3'
miRNA:   3'- uucuUGGACGGG-GACGCG---UGGuUCCU- -5'
23557 5' -58.2 NC_005261.1 + 69005 0.68 0.609385
Target:  5'- -cGAACC-GCCCCaGCGCGCaCAgcucccggAGGAc -3'
miRNA:   3'- uuCUUGGaCGGGGaCGCGUG-GU--------UCCU- -5'
23557 5' -58.2 NC_005261.1 + 127676 0.69 0.599062
Target:  5'- cGGGACggcggcggccgCUGCCCCgGCgGCGCCgGAGGAg -3'
miRNA:   3'- uUCUUG-----------GACGGGGaCG-CGUGG-UUCCU- -5'
23557 5' -58.2 NC_005261.1 + 93442 0.69 0.594939
Target:  5'- uGAGGGCCguggccagcaccgGCCCCaGCGCgguGCCGGGGc -3'
miRNA:   3'- -UUCUUGGa------------CGGGGaCGCG---UGGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 136387 0.69 0.588764
Target:  5'- -cGGGCCcgGCgCCUucgcGCGCGCCGAGGc -3'
miRNA:   3'- uuCUUGGa-CGgGGA----CGCGUGGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 101822 0.69 0.588764
Target:  5'- ---cGCCUGCCCCaucccgcuaUGUGgGCCAGGGc -3'
miRNA:   3'- uucuUGGACGGGG---------ACGCgUGGUUCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.