miRNA display CGI


Results 21 - 40 of 110 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23557 5' -58.2 NC_005261.1 + 8770 0.68 0.640427
Target:  5'- uGGGAACCgugccagcucUGCCCCUcgGCGgcugcagcCGCCGAGGGc -3'
miRNA:   3'- -UUCUUGG----------ACGGGGA--CGC--------GUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 99512 0.67 0.671409
Target:  5'- cGAGGGCCcGCCCgUugcGUGCACCGucgAGGGc -3'
miRNA:   3'- -UUCUUGGaCGGGgA---CGCGUGGU---UCCU- -5'
23557 5' -58.2 NC_005261.1 + 55260 0.66 0.742119
Target:  5'- cGAGGAggUCUGCgCCCccugGCGCGCCGgaggcGGGGg -3'
miRNA:   3'- -UUCUU--GGACG-GGGa---CGCGUGGU-----UCCU- -5'
23557 5' -58.2 NC_005261.1 + 47255 0.66 0.76158
Target:  5'- cGAGGACCUGCgCCgGCcCGCCGGcGAa -3'
miRNA:   3'- -UUCUUGGACGgGGaCGcGUGGUUcCU- -5'
23557 5' -58.2 NC_005261.1 + 97428 0.7 0.488615
Target:  5'- -cGGGCCUGCCCUUGgGCGCgGgucuGGGc -3'
miRNA:   3'- uuCUUGGACGGGGACgCGUGgUu---CCU- -5'
23557 5' -58.2 NC_005261.1 + 31870 0.69 0.588764
Target:  5'- -cGGGCCcgGCgCCUucgcGCGCGCCGAGGc -3'
miRNA:   3'- uuCUUGGa-CGgGGA----CGCGUGGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 44281 0.67 0.712215
Target:  5'- cGGGGCCcGCCgCCagcgGCGgGCCAGGGc -3'
miRNA:   3'- uUCUUGGaCGG-GGa---CGCgUGGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 130310 0.66 0.76158
Target:  5'- --cAACCaGCCgCUGCaGCGCCAuGGAc -3'
miRNA:   3'- uucUUGGaCGGgGACG-CGUGGUuCCU- -5'
23557 5' -58.2 NC_005261.1 + 93442 0.69 0.594939
Target:  5'- uGAGGGCCguggccagcaccgGCCCCaGCGCgguGCCGGGGc -3'
miRNA:   3'- -UUCUUGGa------------CGGGGaCGCG---UGGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 35693 0.66 0.77114
Target:  5'- --cGGCgaGCCCCgGUGgGCCGGGGGc -3'
miRNA:   3'- uucUUGgaCGGGGaCGCgUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 29105 0.67 0.712215
Target:  5'- cGGGGACCgacGCcgaggggagCCCUG-GCGCCGGGGGg -3'
miRNA:   3'- -UUCUUGGa--CG---------GGGACgCGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 123546 0.68 0.609385
Target:  5'- -cGAGCgUGCCCUcGCGCACCGu--- -3'
miRNA:   3'- uuCUUGgACGGGGaCGCGUGGUuccu -5'
23557 5' -58.2 NC_005261.1 + 74646 0.66 0.732237
Target:  5'- uGGGACgaGCCCgUcuucGCGCagGCCGGGGAc -3'
miRNA:   3'- uUCUUGgaCGGGgA----CGCG--UGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 120189 0.66 0.742119
Target:  5'- ---cACCcGCCcaaCCUGCGCugCGAGGu -3'
miRNA:   3'- uucuUGGaCGG---GGACGCGugGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 36580 0.66 0.751904
Target:  5'- cGGGGGCCcGCCgCgGC-CACCGGGGGg -3'
miRNA:   3'- -UUCUUGGaCGGgGaCGcGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 28717 0.66 0.76158
Target:  5'- gGGGGGCCcggggGCCUCgGCGCccuCCGAGGc -3'
miRNA:   3'- -UUCUUGGa----CGGGGaCGCGu--GGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 23818 0.72 0.423468
Target:  5'- -cGGGCUUGCCCCggGCGgGCCGgcuAGGGu -3'
miRNA:   3'- uuCUUGGACGGGGa-CGCgUGGU---UCCU- -5'
23557 5' -58.2 NC_005261.1 + 75694 0.71 0.441561
Target:  5'- cGAGGACCagaGCCUgCUGCGCGCCAcGGu -3'
miRNA:   3'- -UUCUUGGa--CGGG-GACGCGUGGUuCCu -5'
23557 5' -58.2 NC_005261.1 + 103839 0.69 0.555046
Target:  5'- gAGGAGCUcGCCCUUGCGCGCgAgccgcggcggcggcGGGGc -3'
miRNA:   3'- -UUCUUGGaCGGGGACGCGUGgU--------------UCCU- -5'
23557 5' -58.2 NC_005261.1 + 33523 0.69 0.568271
Target:  5'- cGGcACCgcugGCCCCgggaGCACCAGGGGc -3'
miRNA:   3'- uUCuUGGa---CGGGGacg-CGUGGUUCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.