miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23557 5' -58.2 NC_005261.1 + 99512 0.67 0.671409
Target:  5'- cGAGGGCCcGCCCgUugcGUGCACCGucgAGGGc -3'
miRNA:   3'- -UUCUUGGaCGGGgA---CGCGUGGU---UCCU- -5'
23557 5' -58.2 NC_005261.1 + 15258 0.68 0.661103
Target:  5'- -uGGGCCgcgaucGCCCCggcgGCGCcGCCGGGGc -3'
miRNA:   3'- uuCUUGGa-----CGGGGa---CGCG-UGGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 33580 0.68 0.640427
Target:  5'- ---uGCCaGCCCCgcgaGCACCAGGGGc -3'
miRNA:   3'- uucuUGGaCGGGGacg-CGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 8770 0.68 0.640427
Target:  5'- uGGGAACCgugccagcucUGCCCCUcgGCGgcugcagcCGCCGAGGGc -3'
miRNA:   3'- -UUCUUGG----------ACGGGGA--CGC--------GUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 123546 0.68 0.609385
Target:  5'- -cGAGCgUGCCCUcGCGCACCGu--- -3'
miRNA:   3'- uuCUUGgACGGGGaCGCGUGGUuccu -5'
23557 5' -58.2 NC_005261.1 + 127676 0.69 0.599062
Target:  5'- cGGGACggcggcggccgCUGCCCCgGCgGCGCCgGAGGAg -3'
miRNA:   3'- uUCUUG-----------GACGGGGaCG-CGUGG-UUCCU- -5'
23557 5' -58.2 NC_005261.1 + 33730 0.82 0.094214
Target:  5'- uGGGGGCCUGCCCCUcGCGCggcGCCGGGGc -3'
miRNA:   3'- -UUCUUGGACGGGGA-CGCG---UGGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 34430 0.77 0.210811
Target:  5'- -cGcGCCUGCCCCUGCugccgaacGCGCCGGGGc -3'
miRNA:   3'- uuCuUGGACGGGGACG--------CGUGGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 131641 0.75 0.269257
Target:  5'- cGAGGACCgacggGCCCCccggGCGCACCGucugcgAGGGu -3'
miRNA:   3'- -UUCUUGGa----CGGGGa---CGCGUGGU------UCCU- -5'
23557 5' -58.2 NC_005261.1 + 118523 0.73 0.344738
Target:  5'- cGAGGcgcCCUGCCCCgccgaccccugcgGCGCGCgCGAGGAc -3'
miRNA:   3'- -UUCUu--GGACGGGGa------------CGCGUG-GUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 119846 0.73 0.383598
Target:  5'- cGGcAGCCUGCCCCugaccgUGCGCucccugaccgccgcaGCCGAGGGc -3'
miRNA:   3'- uUC-UUGGACGGGG------ACGCG---------------UGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 61887 0.72 0.405827
Target:  5'- uGGGcGCCUucucGCCCgUGCGCACCAccgAGGGc -3'
miRNA:   3'- -UUCuUGGA----CGGGgACGCGUGGU---UCCU- -5'
23557 5' -58.2 NC_005261.1 + 127394 0.72 0.405827
Target:  5'- gAGGAGCCcgGCgCCCU-CGCACaCGAGGAu -3'
miRNA:   3'- -UUCUUGGa-CG-GGGAcGCGUG-GUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 23761 0.72 0.423468
Target:  5'- -cGGGCUUGCCCCggGCGgGCCGgcuAGGGu -3'
miRNA:   3'- uuCUUGGACGGGGa-CGCgUGGU---UCCU- -5'
23557 5' -58.2 NC_005261.1 + 23818 0.72 0.423468
Target:  5'- -cGGGCUUGCCCCggGCGgGCCGgcuAGGGu -3'
miRNA:   3'- uuCUUGGACGGGGa-CGCgUGGU---UCCU- -5'
23557 5' -58.2 NC_005261.1 + 23875 0.72 0.423468
Target:  5'- -cGGGCUUGCCCCggGCGgGCCGgcuAGGGu -3'
miRNA:   3'- uuCUUGGACGGGGa-CGCgUGGU---UCCU- -5'
23557 5' -58.2 NC_005261.1 + 44954 0.71 0.441561
Target:  5'- gGAGAGCCUGCUgCgggacGCGCGCgAGGGc -3'
miRNA:   3'- -UUCUUGGACGGgGa----CGCGUGgUUCCu -5'
23557 5' -58.2 NC_005261.1 + 31870 0.69 0.588764
Target:  5'- -cGGGCCcgGCgCCUucgcGCGCGCCGAGGc -3'
miRNA:   3'- uuCUUGGa-CGgGGA----CGCGUGGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 26646 0.69 0.567251
Target:  5'- cAGGuCCUGCCCCUGgGCcacacgcccggacGCgGAGGGu -3'
miRNA:   3'- uUCUuGGACGGGGACgCG-------------UGgUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 33523 0.69 0.568271
Target:  5'- cGGcACCgcugGCCCCgggaGCACCAGGGGc -3'
miRNA:   3'- uUCuUGGa---CGGGGacg-CGUGGUUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.