miRNA display CGI


Results 41 - 60 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23557 5' -58.2 NC_005261.1 + 26646 0.69 0.567251
Target:  5'- cAGGuCCUGCCCCUGgGCcacacgcccggacGCgGAGGGu -3'
miRNA:   3'- uUCUuGGACGGGGACgCG-------------UGgUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 75694 0.71 0.441561
Target:  5'- cGAGGACCagaGCCUgCUGCGCGCCAcGGu -3'
miRNA:   3'- -UUCUUGGa--CGGG-GACGCGUGGUuCCu -5'
23557 5' -58.2 NC_005261.1 + 93442 0.69 0.594939
Target:  5'- uGAGGGCCguggccagcaccgGCCCCaGCGCgguGCCGGGGc -3'
miRNA:   3'- -UUCUUGGa------------CGGGGaCGCG---UGGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 8770 0.68 0.640427
Target:  5'- uGGGAACCgugccagcucUGCCCCUcgGCGgcugcagcCGCCGAGGGc -3'
miRNA:   3'- -UUCUUGG----------ACGGGGA--CGC--------GUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 99512 0.67 0.671409
Target:  5'- cGAGGGCCcGCCCgUugcGUGCACCGucgAGGGc -3'
miRNA:   3'- -UUCUUGGaCGGGgA---CGCGUGGU---UCCU- -5'
23557 5' -58.2 NC_005261.1 + 74646 0.66 0.732237
Target:  5'- uGGGACgaGCCCgUcuucGCGCagGCCGGGGAc -3'
miRNA:   3'- uUCUUGgaCGGGgA----CGCG--UGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 120189 0.66 0.742119
Target:  5'- ---cACCcGCCcaaCCUGCGCugCGAGGu -3'
miRNA:   3'- uucuUGGaCGG---GGACGCGugGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 36580 0.66 0.751904
Target:  5'- cGGGGGCCcGCCgCgGC-CACCGGGGGg -3'
miRNA:   3'- -UUCUUGGaCGGgGaCGcGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 75153 0.66 0.76158
Target:  5'- gGAGGcguACCcGCCgCUGUGCGCCAGcGAc -3'
miRNA:   3'- -UUCU---UGGaCGGgGACGCGUGGUUcCU- -5'
23557 5' -58.2 NC_005261.1 + 92515 0.66 0.76158
Target:  5'- uGGuACaCUGCgucgcggaacCCCUGCGCGgCGAGGGg -3'
miRNA:   3'- uUCuUG-GACG----------GGGACGCGUgGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 73705 0.66 0.751904
Target:  5'- -cGGACCUGCCCCc-CGa--CGAGGAg -3'
miRNA:   3'- uuCUUGGACGGGGacGCgugGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 133234 0.66 0.76158
Target:  5'- gGGGGGCCcggggGCCUCgGCGCccuCCGAGGc -3'
miRNA:   3'- -UUCUUGGa----CGGGGaCGCGu--GGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 58346 0.66 0.751904
Target:  5'- aAGGAGC--GCgCCCUGUGgGCCGAGGc -3'
miRNA:   3'- -UUCUUGgaCG-GGGACGCgUGGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 31815 0.69 0.578497
Target:  5'- -uGGACCgcgGCCCgCUGCaGCGCCGcgcGGAu -3'
miRNA:   3'- uuCUUGGa--CGGG-GACG-CGUGGUu--CCU- -5'
23557 5' -58.2 NC_005261.1 + 39270 0.69 0.588764
Target:  5'- cGGGACCUGCCgagCCUGaCGCucgacuaCGAGGAc -3'
miRNA:   3'- uUCUUGGACGG---GGAC-GCGug-----GUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 101822 0.69 0.588764
Target:  5'- ---cGCCUGCCCCaucccgcuaUGUGgGCCAGGGc -3'
miRNA:   3'- uucuUGGACGGGG---------ACGCgUGGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 37622 0.7 0.51795
Target:  5'- cGGGACCUGCaCCUGCGCgGCCGcguGGc -3'
miRNA:   3'- uUCUUGGACGgGGACGCG-UGGUu--CCu -5'
23557 5' -58.2 NC_005261.1 + 128392 0.72 0.423468
Target:  5'- -cGGGCUUGCCCCggGCGgGCCGgcuAGGGu -3'
miRNA:   3'- uuCUUGGACGGGGa-CGCgUGGU---UCCU- -5'
23557 5' -58.2 NC_005261.1 + 136387 0.69 0.588764
Target:  5'- -cGGGCCcgGCgCCUucgcGCGCGCCGAGGc -3'
miRNA:   3'- uuCUUGGa-CGgGGA----CGCGUGGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 48809 0.7 0.50809
Target:  5'- gGGGAGCCcggcgGCCgCgcaCGCGCCGAGGAa -3'
miRNA:   3'- -UUCUUGGa----CGGgGac-GCGUGGUUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.