miRNA display CGI


Results 61 - 80 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23557 5' -58.2 NC_005261.1 + 75153 0.66 0.76158
Target:  5'- gGAGGcguACCcGCCgCUGUGCGCCAGcGAc -3'
miRNA:   3'- -UUCU---UGGaCGGgGACGCGUGGUUcCU- -5'
23557 5' -58.2 NC_005261.1 + 49366 0.67 0.702094
Target:  5'- gGAGAGgCUGUCCCgcgagGCGCgGCCcAGGu -3'
miRNA:   3'- -UUCUUgGACGGGGa----CGCG-UGGuUCCu -5'
23557 5' -58.2 NC_005261.1 + 34914 0.69 0.568271
Target:  5'- uGGAcGCgCUGCUgCUGCGCugCAGGGc -3'
miRNA:   3'- uUCU-UG-GACGGgGACGCGugGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 109986 0.69 0.55809
Target:  5'- -cGAGCa-GCCCCcgcuaucgcGCGCGCCGGGGGg -3'
miRNA:   3'- uuCUUGgaCGGGGa--------CGCGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 131163 0.69 0.567251
Target:  5'- cAGGuCCUGCCCCUGgGCcacacgcccggacGCgGAGGGu -3'
miRNA:   3'- uUCUuGGACGGGGACgCG-------------UGgUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 357 0.69 0.568271
Target:  5'- cGGcACCgcugGCCCCgggaGCACCAGGGGc -3'
miRNA:   3'- uUCuUGGa---CGGGGacg-CGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 138040 0.69 0.568271
Target:  5'- cGGcACCgcugGCCCCgggaGCACCAGGGGc -3'
miRNA:   3'- uUCuUGGa---CGGGGacg-CGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 31815 0.69 0.578497
Target:  5'- -uGGACCgcgGCCCgCUGCaGCGCCGcgcGGAu -3'
miRNA:   3'- uuCUUGGa--CGGG-GACG-CGUGGUu--CCU- -5'
23557 5' -58.2 NC_005261.1 + 39270 0.69 0.588764
Target:  5'- cGGGACCUGCCgagCCUGaCGCucgacuaCGAGGAc -3'
miRNA:   3'- uUCUUGGACGG---GGAC-GCGug-----GUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 93964 0.67 0.712215
Target:  5'- -cGGGCCccGCCCCcccGCGCGCCGcGGc -3'
miRNA:   3'- uuCUUGGa-CGGGGa--CGCGUGGUuCCu -5'
23557 5' -58.2 NC_005261.1 + 133623 0.67 0.712215
Target:  5'- cGGGGACCgacGCcgaggggagCCCUG-GCGCCGGGGGg -3'
miRNA:   3'- -UUCUUGGa--CG---------GGGACgCGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 83540 0.67 0.722265
Target:  5'- -cGAGCUgcgGCCUC-GCGCACCu-GGAc -3'
miRNA:   3'- uuCUUGGa--CGGGGaCGCGUGGuuCCU- -5'
23557 5' -58.2 NC_005261.1 + 92515 0.66 0.76158
Target:  5'- uGGuACaCUGCgucgcggaacCCCUGCGCGgCGAGGGg -3'
miRNA:   3'- uUCuUG-GACG----------GGGACGCGUgGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 73705 0.66 0.751904
Target:  5'- -cGGACCUGCCCCc-CGa--CGAGGAg -3'
miRNA:   3'- uuCUUGGACGGGGacGCgugGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 58346 0.66 0.751904
Target:  5'- aAGGAGC--GCgCCCUGUGgGCCGAGGc -3'
miRNA:   3'- -UUCUUGgaCG-GGGACGCgUGGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 122953 0.66 0.742119
Target:  5'- --cGACCgcgcGCCCCggcgGCGCcGCCGGGGc -3'
miRNA:   3'- uucUUGGa---CGGGGa---CGCG-UGGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 78231 0.66 0.742119
Target:  5'- ----cCCUGCCCgUcGCGCugcCCGAGGGu -3'
miRNA:   3'- uucuuGGACGGGgA-CGCGu--GGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 69854 0.66 0.742119
Target:  5'- -uGAGCaCaGCCCCgagGCGaCGCCGAGcGAc -3'
miRNA:   3'- uuCUUG-GaCGGGGa--CGC-GUGGUUC-CU- -5'
23557 5' -58.2 NC_005261.1 + 4072 0.66 0.740151
Target:  5'- cGGGAGCagcaGCCCCggguggcgccagGCGCAgcCCAGGGGg -3'
miRNA:   3'- -UUCUUGga--CGGGGa-----------CGCGU--GGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 98791 0.66 0.732237
Target:  5'- cGGAGgCUcggGCCCUgcgGaCGCGCCGGGGGa -3'
miRNA:   3'- uUCUUgGA---CGGGGa--C-GCGUGGUUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.