miRNA display CGI


Results 61 - 80 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23558 5' -59.5 NC_005261.1 + 34420 0.67 0.663154
Target:  5'- gCGCGCGGccCGcGcCUGCCCCU-GCUGc -3'
miRNA:   3'- -GCGCGUCu-GCaCuGGCGGGGAaCGAC- -5'
23558 5' -59.5 NC_005261.1 + 100562 0.67 0.663154
Target:  5'- uCGCGCAG-CGUGcacACCGCCgCCUcGUc- -3'
miRNA:   3'- -GCGCGUCuGCAC---UGGCGG-GGAaCGac -5'
23558 5' -59.5 NC_005261.1 + 64854 0.67 0.663154
Target:  5'- aCGCGC--GCGUGGCCGCg---UGCUGg -3'
miRNA:   3'- -GCGCGucUGCACUGGCGgggaACGAC- -5'
23558 5' -59.5 NC_005261.1 + 47380 0.67 0.653107
Target:  5'- gCGCGCacaaccgucgGGGCGgcGCCGCCCCccgUGCa- -3'
miRNA:   3'- -GCGCG----------UCUGCacUGGCGGGGa--ACGac -5'
23558 5' -59.5 NC_005261.1 + 43028 0.68 0.643045
Target:  5'- cCGCGCGGGCG-GGCgGCgcggguCCCaggGCUGg -3'
miRNA:   3'- -GCGCGUCUGCaCUGgCG------GGGaa-CGAC- -5'
23558 5' -59.5 NC_005261.1 + 132024 0.68 0.643045
Target:  5'- cCGCcgucaCGGACGUGGCCGCCCUg----- -3'
miRNA:   3'- -GCGc----GUCUGCACUGGCGGGGaacgac -5'
23558 5' -59.5 NC_005261.1 + 118108 0.68 0.643045
Target:  5'- cCGCGCAGACGcUGcGCCGCCg---GCUc -3'
miRNA:   3'- -GCGCGUCUGC-AC-UGGCGGggaaCGAc -5'
23558 5' -59.5 NC_005261.1 + 21005 0.68 0.643045
Target:  5'- gCGCGCcuuggGGGCGUGACaccgaGCCCUggggGCg- -3'
miRNA:   3'- -GCGCG-----UCUGCACUGg----CGGGGaa--CGac -5'
23558 5' -59.5 NC_005261.1 + 22312 0.68 0.643045
Target:  5'- gCGCGCGGACGcGGCgGCCggc-GCUGa -3'
miRNA:   3'- -GCGCGUCUGCaCUGgCGGggaaCGAC- -5'
23558 5' -59.5 NC_005261.1 + 78702 0.68 0.643045
Target:  5'- gCGCGguGGCGgcggGGCUGCUCCaggGCg- -3'
miRNA:   3'- -GCGCguCUGCa---CUGGCGGGGaa-CGac -5'
23558 5' -59.5 NC_005261.1 + 11718 0.68 0.643045
Target:  5'- gGCGCGGGCGcccaggcaGACCGCCUgCggcaGCUGg -3'
miRNA:   3'- gCGCGUCUGCa-------CUGGCGGG-Gaa--CGAC- -5'
23558 5' -59.5 NC_005261.1 + 8256 0.68 0.643045
Target:  5'- aGCGCAuGCGcgacacuugccUGGCCGCCCU--GCUGc -3'
miRNA:   3'- gCGCGUcUGC-----------ACUGGCGGGGaaCGAC- -5'
23558 5' -59.5 NC_005261.1 + 68763 0.68 0.632974
Target:  5'- uCGCGCGGAUGUGGCCcucgacGCgCCgcaGCUc -3'
miRNA:   3'- -GCGCGUCUGCACUGG------CGgGGaa-CGAc -5'
23558 5' -59.5 NC_005261.1 + 116163 0.68 0.632974
Target:  5'- gCGCGCGGuCGcGGCCGCgucCCCgacgccGCUGg -3'
miRNA:   3'- -GCGCGUCuGCaCUGGCG---GGGaa----CGAC- -5'
23558 5' -59.5 NC_005261.1 + 99887 0.68 0.632974
Target:  5'- gGCGCgaGGGCGuUGACCGCCaCCcgGCc- -3'
miRNA:   3'- gCGCG--UCUGC-ACUGGCGG-GGaaCGac -5'
23558 5' -59.5 NC_005261.1 + 70582 0.68 0.632974
Target:  5'- gCGCGCGGACG-GGCgGCCCgCguucucgGCg- -3'
miRNA:   3'- -GCGCGUCUGCaCUGgCGGG-Gaa-----CGac -5'
23558 5' -59.5 NC_005261.1 + 41511 0.68 0.632974
Target:  5'- cCGCGCccgGGugGUGcCCGCCaaCUcgcUGCUGg -3'
miRNA:   3'- -GCGCG---UCugCACuGGCGGg-GA---ACGAC- -5'
23558 5' -59.5 NC_005261.1 + 15311 0.68 0.632974
Target:  5'- cCGCGCugcucGGCGUGcgcuccaacGCCGUCCCggaggcGCUGg -3'
miRNA:   3'- -GCGCGu----CUGCAC---------UGGCGGGGaa----CGAC- -5'
23558 5' -59.5 NC_005261.1 + 120228 0.68 0.622902
Target:  5'- aGCGCcGACGUGgagcGCCGCUUCgccgcgGCUGc -3'
miRNA:   3'- gCGCGuCUGCAC----UGGCGGGGaa----CGAC- -5'
23558 5' -59.5 NC_005261.1 + 122447 0.68 0.622902
Target:  5'- cCGCGCGGGCGgcgcCCGCCagcggCCUUGUg- -3'
miRNA:   3'- -GCGCGUCUGCacu-GGCGG-----GGAACGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.