miRNA display CGI


Results 41 - 60 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23558 5' -59.5 NC_005261.1 + 29013 0.66 0.722631
Target:  5'- gCGCGCGG-CGUG-CCGCgCCUacgagcgccUGCg- -3'
miRNA:   3'- -GCGCGUCuGCACuGGCGgGGA---------ACGac -5'
23558 5' -59.5 NC_005261.1 + 7905 0.66 0.722631
Target:  5'- aGCGCGGcCG-GGCCGUCCauggcGCUGc -3'
miRNA:   3'- gCGCGUCuGCaCUGGCGGGgaa--CGAC- -5'
23558 5' -59.5 NC_005261.1 + 53654 0.66 0.722631
Target:  5'- gGCGCAGACGgccgucuacggGGCCguGCUCCaggcGCUGg -3'
miRNA:   3'- gCGCGUCUGCa----------CUGG--CGGGGaa--CGAC- -5'
23558 5' -59.5 NC_005261.1 + 75973 0.66 0.721657
Target:  5'- aCGCaGCucuucccGGGCGcGGCCGCCCUcgcGCUGg -3'
miRNA:   3'- -GCG-CG-------UCUGCaCUGGCGGGGaa-CGAC- -5'
23558 5' -59.5 NC_005261.1 + 18426 0.66 0.712856
Target:  5'- aGCGCAGACGUccucGCCGggcagcgcguuCCCCgUGCa- -3'
miRNA:   3'- gCGCGUCUGCAc---UGGC-----------GGGGaACGac -5'
23558 5' -59.5 NC_005261.1 + 83244 0.66 0.712856
Target:  5'- gGcCGCcGGCGUGGCCGUaaagaCCUUUGCg- -3'
miRNA:   3'- gC-GCGuCUGCACUGGCG-----GGGAACGac -5'
23558 5' -59.5 NC_005261.1 + 72857 0.66 0.711875
Target:  5'- aGCGCccAGGCGUGGaccgcgggcagguCCGCCCCgccGCc- -3'
miRNA:   3'- gCGCG--UCUGCACU-------------GGCGGGGaa-CGac -5'
23558 5' -59.5 NC_005261.1 + 98436 0.67 0.703014
Target:  5'- gGCGCcGGCGgccgcGCCGCCCCccgGCg- -3'
miRNA:   3'- gCGCGuCUGCac---UGGCGGGGaa-CGac -5'
23558 5' -59.5 NC_005261.1 + 102465 0.67 0.703014
Target:  5'- gCGCGCAGGCGccgGACCuCCUCggcGCg- -3'
miRNA:   3'- -GCGCGUCUGCa--CUGGcGGGGaa-CGac -5'
23558 5' -59.5 NC_005261.1 + 55243 0.67 0.693114
Target:  5'- uGCGCgAGGCG--GCCGCCUCcgUGCUc -3'
miRNA:   3'- gCGCG-UCUGCacUGGCGGGGa-ACGAc -5'
23558 5' -59.5 NC_005261.1 + 66363 0.67 0.693114
Target:  5'- cCGCGCGGGCG-GACCGCaagcgGCg- -3'
miRNA:   3'- -GCGCGUCUGCaCUGGCGgggaaCGac -5'
23558 5' -59.5 NC_005261.1 + 119707 0.67 0.690134
Target:  5'- aCGCGCggcgaugaggaGGGCGUGcccaaccccuucccGCgCGCCCCgcccaugUGCUGu -3'
miRNA:   3'- -GCGCG-----------UCUGCAC--------------UG-GCGGGGa------ACGAC- -5'
23558 5' -59.5 NC_005261.1 + 104511 0.67 0.683166
Target:  5'- gGgGCAGGCccccACCGCCCCUcgUGCa- -3'
miRNA:   3'- gCgCGUCUGcac-UGGCGGGGA--ACGac -5'
23558 5' -59.5 NC_005261.1 + 74813 0.67 0.683166
Target:  5'- cCGCGUggcGGAgGUGGCCGCCg--UGCUc -3'
miRNA:   3'- -GCGCG---UCUgCACUGGCGGggaACGAc -5'
23558 5' -59.5 NC_005261.1 + 42805 0.67 0.673176
Target:  5'- gCGUGCAGACGUccgcGGCCGCgCCg-GCc- -3'
miRNA:   3'- -GCGCGUCUGCA----CUGGCGgGGaaCGac -5'
23558 5' -59.5 NC_005261.1 + 125416 0.67 0.673176
Target:  5'- gGCGCGGGCGgcgcucaGGCCGCCCaucccuaGCg- -3'
miRNA:   3'- gCGCGUCUGCa------CUGGCGGGgaa----CGac -5'
23558 5' -59.5 NC_005261.1 + 50776 0.67 0.673176
Target:  5'- aGCGCAcaccgcGGCGgcGGCCGCCCCg-GCg- -3'
miRNA:   3'- gCGCGU------CUGCa-CUGGCGGGGaaCGac -5'
23558 5' -59.5 NC_005261.1 + 67034 0.67 0.673176
Target:  5'- uCGCGCAG-C-UGGCCgcGCCCCgcgaGCUGc -3'
miRNA:   3'- -GCGCGUCuGcACUGG--CGGGGaa--CGAC- -5'
23558 5' -59.5 NC_005261.1 + 9797 0.67 0.673176
Target:  5'- cCGCGCuGuucgccaugguGCGcGGCCuugaCCCCUUGCUGg -3'
miRNA:   3'- -GCGCGuC-----------UGCaCUGGc---GGGGAACGAC- -5'
23558 5' -59.5 NC_005261.1 + 64854 0.67 0.663154
Target:  5'- aCGCGC--GCGUGGCCGCg---UGCUGg -3'
miRNA:   3'- -GCGCGucUGCACUGGCGgggaACGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.