miRNA display CGI


Results 41 - 60 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23558 5' -59.5 NC_005261.1 + 32204 0.71 0.467038
Target:  5'- gCGCGguGGCGUGccuCCGgUCCUcGCUGu -3'
miRNA:   3'- -GCGCguCUGCACu--GGCgGGGAaCGAC- -5'
23558 5' -59.5 NC_005261.1 + 65391 0.71 0.467038
Target:  5'- gGCGCuGGACGcccUGGCCGaCCgCCUUGCg- -3'
miRNA:   3'- gCGCG-UCUGC---ACUGGC-GG-GGAACGac -5'
23558 5' -59.5 NC_005261.1 + 106117 0.71 0.467038
Target:  5'- gGCGCGGugGcUGGCCGCCUCgcccuccGCg- -3'
miRNA:   3'- gCGCGUCugC-ACUGGCGGGGaa-----CGac -5'
23558 5' -59.5 NC_005261.1 + 29251 0.71 0.467038
Target:  5'- cCGCGC-GACG-GGCCGCCgCC--GCUGg -3'
miRNA:   3'- -GCGCGuCUGCaCUGGCGG-GGaaCGAC- -5'
23558 5' -59.5 NC_005261.1 + 36055 0.7 0.485586
Target:  5'- aCGCGCGgaucGACGUG-CCGCCgCC--GCUGg -3'
miRNA:   3'- -GCGCGU----CUGCACuGGCGG-GGaaCGAC- -5'
23558 5' -59.5 NC_005261.1 + 30481 0.7 0.485586
Target:  5'- aGCGCugGGGCGUGGCC-CCCCccGCg- -3'
miRNA:   3'- gCGCG--UCUGCACUGGcGGGGaaCGac -5'
23558 5' -59.5 NC_005261.1 + 130515 0.7 0.491219
Target:  5'- gGCGCAGGCGcUGGCCgaagcgcGCCCgCUcgucgcguuuuaucUGCUGg -3'
miRNA:   3'- gCGCGUCUGC-ACUGG-------CGGG-GA--------------ACGAC- -5'
23558 5' -59.5 NC_005261.1 + 105121 0.7 0.494047
Target:  5'- cCGCGCGGGCGcgGGCCGCCggcgcgcgcagguCCUcGCg- -3'
miRNA:   3'- -GCGCGUCUGCa-CUGGCGG-------------GGAaCGac -5'
23558 5' -59.5 NC_005261.1 + 10375 0.7 0.494991
Target:  5'- uCGUGCccuGGCGccgcGACCGCCCCguccGCUGc -3'
miRNA:   3'- -GCGCGu--CUGCa---CUGGCGGGGaa--CGAC- -5'
23558 5' -59.5 NC_005261.1 + 17172 0.7 0.504478
Target:  5'- gGCGCGGGCGUGGgCaGCCCUgccGCg- -3'
miRNA:   3'- gCGCGUCUGCACUgG-CGGGGaa-CGac -5'
23558 5' -59.5 NC_005261.1 + 89023 0.7 0.504478
Target:  5'- gGCGCcguGGACGUGACgacgCGCUUCcUGCUGg -3'
miRNA:   3'- gCGCG---UCUGCACUG----GCGGGGaACGAC- -5'
23558 5' -59.5 NC_005261.1 + 14767 0.7 0.504478
Target:  5'- cCGCGaCAGGgG-GGCCGCCCCgcGCa- -3'
miRNA:   3'- -GCGC-GUCUgCaCUGGCGGGGaaCGac -5'
23558 5' -59.5 NC_005261.1 + 95550 0.7 0.504478
Target:  5'- cCGCGCGGcugccggcgGCGgcccGGCCGCCgCUUGgCUGg -3'
miRNA:   3'- -GCGCGUC---------UGCa---CUGGCGGgGAAC-GAC- -5'
23558 5' -59.5 NC_005261.1 + 132958 0.7 0.514042
Target:  5'- uGCGCcGACGUGGCCGCCUUcgucGCc- -3'
miRNA:   3'- gCGCGuCUGCACUGGCGGGGaa--CGac -5'
23558 5' -59.5 NC_005261.1 + 122118 0.7 0.522712
Target:  5'- cCGCGguGaucgcguGCGUGGCCGCCgCCggUGCc- -3'
miRNA:   3'- -GCGCguC-------UGCACUGGCGG-GGa-ACGac -5'
23558 5' -59.5 NC_005261.1 + 80526 0.69 0.532412
Target:  5'- uCGUGCAGAUGgacgaggcccugcUGGCCcuguGCCCCgccgGCUGg -3'
miRNA:   3'- -GCGCGUCUGC-------------ACUGG----CGGGGaa--CGAC- -5'
23558 5' -59.5 NC_005261.1 + 65118 0.69 0.533385
Target:  5'- cCGCGCGGACGcgggcuuucUGGCCGCCg--UGCg- -3'
miRNA:   3'- -GCGCGUCUGC---------ACUGGCGGggaACGac -5'
23558 5' -59.5 NC_005261.1 + 34137 0.69 0.533385
Target:  5'- uCGCGCGGAgCGccGCCGCCCUguccgccgaGCUGg -3'
miRNA:   3'- -GCGCGUCU-GCacUGGCGGGGaa-------CGAC- -5'
23558 5' -59.5 NC_005261.1 + 33392 0.69 0.533385
Target:  5'- cCGCGCGGuccGCGUGGCgCgGCCCCgcgacgccGCUGc -3'
miRNA:   3'- -GCGCGUC---UGCACUG-G-CGGGGaa------CGAC- -5'
23558 5' -59.5 NC_005261.1 + 11782 0.69 0.533385
Target:  5'- gCGCGCuGGCGcGGCUGgCCUUUGCg- -3'
miRNA:   3'- -GCGCGuCUGCaCUGGCgGGGAACGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.