Results 41 - 60 of 173 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23558 | 5' | -59.5 | NC_005261.1 | + | 31450 | 0.66 | 0.75147 |
Target: 5'- gGCGCAGACGgcgcuggcgcUGGCCGCCg---GCa- -3' miRNA: 3'- gCGCGUCUGC----------ACUGGCGGggaaCGac -5' |
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23558 | 5' | -59.5 | NC_005261.1 | + | 17564 | 0.66 | 0.75147 |
Target: 5'- gCGCGCgagaucacAGGCGcGcCCGCgCCUUGCg- -3' miRNA: 3'- -GCGCG--------UCUGCaCuGGCGgGGAACGac -5' |
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23558 | 5' | -59.5 | NC_005261.1 | + | 115482 | 0.66 | 0.745767 |
Target: 5'- aCGCGUGGGcCGccGCCGCCCCgcgcccgacuggcGCUGg -3' miRNA: 3'- -GCGCGUCU-GCacUGGCGGGGaa-----------CGAC- -5' |
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23558 | 5' | -59.5 | NC_005261.1 | + | 6028 | 0.66 | 0.741947 |
Target: 5'- gGCGCGGGCGggcccgGACCcaagcaaugcggGCCCCcgcccgcGCUGc -3' miRNA: 3'- gCGCGUCUGCa-----CUGG------------CGGGGaa-----CGAC- -5' |
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23558 | 5' | -59.5 | NC_005261.1 | + | 52687 | 0.66 | 0.741947 |
Target: 5'- gCGcCGCAGACGgaGCCGCCCgCgcGCg- -3' miRNA: 3'- -GC-GCGUCUGCacUGGCGGG-GaaCGac -5' |
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23558 | 5' | -59.5 | NC_005261.1 | + | 44753 | 0.66 | 0.741947 |
Target: 5'- uCGcCGCGGGCGacGCgCGCCCCggcaccgcGCUGg -3' miRNA: 3'- -GC-GCGUCUGCacUG-GCGGGGaa------CGAC- -5' |
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23558 | 5' | -59.5 | NC_005261.1 | + | 48019 | 0.66 | 0.732331 |
Target: 5'- cCGCGCgaGGGCGcuccGCCGCCCCcgcGCUc -3' miRNA: 3'- -GCGCG--UCUGCac--UGGCGGGGaa-CGAc -5' |
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23558 | 5' | -59.5 | NC_005261.1 | + | 50776 | 0.67 | 0.673176 |
Target: 5'- aGCGCAcaccgcGGCGgcGGCCGCCCCg-GCg- -3' miRNA: 3'- gCGCGU------CUGCa-CUGGCGGGGaaCGac -5' |
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23558 | 5' | -59.5 | NC_005261.1 | + | 74813 | 0.67 | 0.683166 |
Target: 5'- cCGCGUggcGGAgGUGGCCGCCg--UGCUc -3' miRNA: 3'- -GCGCG---UCUgCACUGGCGGggaACGAc -5' |
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23558 | 5' | -59.5 | NC_005261.1 | + | 119707 | 0.67 | 0.690134 |
Target: 5'- aCGCGCggcgaugaggaGGGCGUGcccaaccccuucccGCgCGCCCCgcccaugUGCUGu -3' miRNA: 3'- -GCGCG-----------UCUGCAC--------------UG-GCGGGGa------ACGAC- -5' |
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23558 | 5' | -59.5 | NC_005261.1 | + | 102465 | 0.67 | 0.703014 |
Target: 5'- gCGCGCAGGCGccgGACCuCCUCggcGCg- -3' miRNA: 3'- -GCGCGUCUGCa--CUGGcGGGGaa-CGac -5' |
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23558 | 5' | -59.5 | NC_005261.1 | + | 125416 | 0.67 | 0.673176 |
Target: 5'- gGCGCGGGCGgcgcucaGGCCGCCCaucccuaGCg- -3' miRNA: 3'- gCGCGUCUGCa------CUGGCGGGgaa----CGac -5' |
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23558 | 5' | -59.5 | NC_005261.1 | + | 42805 | 0.67 | 0.673176 |
Target: 5'- gCGUGCAGACGUccgcGGCCGCgCCg-GCc- -3' miRNA: 3'- -GCGCGUCUGCA----CUGGCGgGGaaCGac -5' |
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23558 | 5' | -59.5 | NC_005261.1 | + | 64854 | 0.67 | 0.663154 |
Target: 5'- aCGCGC--GCGUGGCCGCg---UGCUGg -3' miRNA: 3'- -GCGCGucUGCACUGGCGgggaACGAC- -5' |
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23558 | 5' | -59.5 | NC_005261.1 | + | 67034 | 0.67 | 0.673176 |
Target: 5'- uCGCGCAG-C-UGGCCgcGCCCCgcgaGCUGc -3' miRNA: 3'- -GCGCGUCuGcACUGG--CGGGGaa--CGAC- -5' |
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23558 | 5' | -59.5 | NC_005261.1 | + | 55243 | 0.67 | 0.693114 |
Target: 5'- uGCGCgAGGCG--GCCGCCUCcgUGCUc -3' miRNA: 3'- gCGCG-UCUGCacUGGCGGGGa-ACGAc -5' |
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23558 | 5' | -59.5 | NC_005261.1 | + | 66363 | 0.67 | 0.693114 |
Target: 5'- cCGCGCGGGCG-GACCGCaagcgGCg- -3' miRNA: 3'- -GCGCGUCUGCaCUGGCGgggaaCGac -5' |
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23558 | 5' | -59.5 | NC_005261.1 | + | 98436 | 0.67 | 0.703014 |
Target: 5'- gGCGCcGGCGgccgcGCCGCCCCccgGCg- -3' miRNA: 3'- gCGCGuCUGCac---UGGCGGGGaa-CGac -5' |
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23558 | 5' | -59.5 | NC_005261.1 | + | 104511 | 0.67 | 0.683166 |
Target: 5'- gGgGCAGGCccccACCGCCCCUcgUGCa- -3' miRNA: 3'- gCgCGUCUGcac-UGGCGGGGA--ACGac -5' |
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23558 | 5' | -59.5 | NC_005261.1 | + | 9797 | 0.67 | 0.673176 |
Target: 5'- cCGCGCuGuucgccaugguGCGcGGCCuugaCCCCUUGCUGg -3' miRNA: 3'- -GCGCGuC-----------UGCaCUGGc---GGGGAACGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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