miRNA display CGI


Results 21 - 40 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23558 5' -59.5 NC_005261.1 + 49236 0.66 0.760891
Target:  5'- gCGCGCAGGuc-GGCCGCCgCCgcgGCg- -3'
miRNA:   3'- -GCGCGUCUgcaCUGGCGG-GGaa-CGac -5'
23558 5' -59.5 NC_005261.1 + 64920 0.66 0.760891
Target:  5'- aGCGCGG-CGUGcuccugcucGCCGCCCagggGCg- -3'
miRNA:   3'- gCGCGUCuGCAC---------UGGCGGGgaa-CGac -5'
23558 5' -59.5 NC_005261.1 + 40020 0.66 0.760891
Target:  5'- cCGCGCuGcCGUGGCgGCgCCC--GCUGc -3'
miRNA:   3'- -GCGCGuCuGCACUGgCG-GGGaaCGAC- -5'
23558 5' -59.5 NC_005261.1 + 31057 0.66 0.760891
Target:  5'- aGCGCGG-CGggaGCCGCCgCUgcccgcccgcgUGCUGg -3'
miRNA:   3'- gCGCGUCuGCac-UGGCGGgGA-----------ACGAC- -5'
23558 5' -59.5 NC_005261.1 + 104686 0.66 0.75147
Target:  5'- aGCGCcuGGGCc--ACCGCCCCgaagagcgGCUGg -3'
miRNA:   3'- gCGCG--UCUGcacUGGCGGGGaa------CGAC- -5'
23558 5' -59.5 NC_005261.1 + 89419 0.66 0.750522
Target:  5'- gGCGCGuGCGcGGCCGCcgggcuccccgcgCCCgccgUGCUGg -3'
miRNA:   3'- gCGCGUcUGCaCUGGCG-------------GGGa---ACGAC- -5'
23558 5' -59.5 NC_005261.1 + 12582 0.66 0.732331
Target:  5'- aCGCGCugcuGGgG-GACCGCCUCaaccagcUGCUGg -3'
miRNA:   3'- -GCGCGu---CUgCaCUGGCGGGGa------ACGAC- -5'
23558 5' -59.5 NC_005261.1 + 48019 0.66 0.732331
Target:  5'- cCGCGCgaGGGCGcuccGCCGCCCCcgcGCUc -3'
miRNA:   3'- -GCGCG--UCUGCac--UGGCGGGGaa-CGAc -5'
23558 5' -59.5 NC_005261.1 + 17564 0.66 0.75147
Target:  5'- gCGCGCgagaucacAGGCGcGcCCGCgCCUUGCg- -3'
miRNA:   3'- -GCGCG--------UCUGCaCuGGCGgGGAACGac -5'
23558 5' -59.5 NC_005261.1 + 36941 0.66 0.75147
Target:  5'- gCGCGCAucGACGaccgcgGGCCcauggaGCCCUUUGCg- -3'
miRNA:   3'- -GCGCGU--CUGCa-----CUGG------CGGGGAACGac -5'
23558 5' -59.5 NC_005261.1 + 12332 0.66 0.75147
Target:  5'- gCGCGCuuggccGGCGcGGCCGCCgCCgcgGCg- -3'
miRNA:   3'- -GCGCGu-----CUGCaCUGGCGG-GGaa-CGac -5'
23558 5' -59.5 NC_005261.1 + 34684 0.66 0.741947
Target:  5'- gCGCGCu-GCGUGACgguggGCCCCUcGCa- -3'
miRNA:   3'- -GCGCGucUGCACUGg----CGGGGAaCGac -5'
23558 5' -59.5 NC_005261.1 + 132697 0.66 0.75147
Target:  5'- cCGCGUGGcCGUGcCCGUCCCg-GCg- -3'
miRNA:   3'- -GCGCGUCuGCACuGGCGGGGaaCGac -5'
23558 5' -59.5 NC_005261.1 + 74689 0.66 0.760891
Target:  5'- cCGCGCGGGagcUGGCCGCCgCgcggGCg- -3'
miRNA:   3'- -GCGCGUCUgc-ACUGGCGGgGaa--CGac -5'
23558 5' -59.5 NC_005261.1 + 86065 0.66 0.75147
Target:  5'- gGCGCGGuACGUGGCCugcaugauGCUCCgcGCg- -3'
miRNA:   3'- gCGCGUC-UGCACUGG--------CGGGGaaCGac -5'
23558 5' -59.5 NC_005261.1 + 118020 0.66 0.760891
Target:  5'- gGCaGCGGGCGcggggccuuUGGCgGCCCCgcuucgccUGCUGc -3'
miRNA:   3'- gCG-CGUCUGC---------ACUGgCGGGGa-------ACGAC- -5'
23558 5' -59.5 NC_005261.1 + 13758 0.66 0.75147
Target:  5'- gGCgGCAuGuACGUGGgCGCCCCUgaggGCa- -3'
miRNA:   3'- gCG-CGU-C-UGCACUgGCGGGGAa---CGac -5'
23558 5' -59.5 NC_005261.1 + 19507 0.66 0.760891
Target:  5'- aGCGCGacGcCGUGcCCGCCCgCgacGCUGa -3'
miRNA:   3'- gCGCGU--CuGCACuGGCGGG-Gaa-CGAC- -5'
23558 5' -59.5 NC_005261.1 + 82454 0.66 0.741947
Target:  5'- cCGCGCcGcCGUuGCCGCCCCcgGCc- -3'
miRNA:   3'- -GCGCGuCuGCAcUGGCGGGGaaCGac -5'
23558 5' -59.5 NC_005261.1 + 18287 0.66 0.722631
Target:  5'- uGCGCGGuacguCGUGACgGUCacgaCCUUGCg- -3'
miRNA:   3'- gCGCGUCu----GCACUGgCGG----GGAACGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.