miRNA display CGI


Results 21 - 40 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23558 5' -59.5 NC_005261.1 + 78389 0.73 0.356503
Target:  5'- cCGCGCA----UGGCCGCCCUcUGCUGg -3'
miRNA:   3'- -GCGCGUcugcACUGGCGGGGaACGAC- -5'
23558 5' -59.5 NC_005261.1 + 105456 0.73 0.36433
Target:  5'- aGCGCGGACacGGCCGCCCUcaGCUc -3'
miRNA:   3'- gCGCGUCUGcaCUGGCGGGGaaCGAc -5'
23558 5' -59.5 NC_005261.1 + 22926 0.72 0.372274
Target:  5'- uCGCGCAGACGUGcGCCGaCgCgUUGCg- -3'
miRNA:   3'- -GCGCGUCUGCAC-UGGC-GgGgAACGac -5'
23558 5' -59.5 NC_005261.1 + 118150 0.72 0.396805
Target:  5'- uCGCGCAGACGcUGGCCGUCgCggcgggGCUu -3'
miRNA:   3'- -GCGCGUCUGC-ACUGGCGGgGaa----CGAc -5'
23558 5' -59.5 NC_005261.1 + 74115 0.72 0.396805
Target:  5'- cCGCGCGGcACGUG-CCGCCCg-UGCc- -3'
miRNA:   3'- -GCGCGUC-UGCACuGGCGGGgaACGac -5'
23558 5' -59.5 NC_005261.1 + 45662 0.72 0.41287
Target:  5'- --aGCGGGCGUGAUcaacgcgCGCCCCgggcUGCUGa -3'
miRNA:   3'- gcgCGUCUGCACUG-------GCGGGGa---ACGAC- -5'
23558 5' -59.5 NC_005261.1 + 55830 0.72 0.413726
Target:  5'- gGCGCGGGgGacGACgGCCCCgcggGCUGg -3'
miRNA:   3'- gCGCGUCUgCa-CUGgCGGGGaa--CGAC- -5'
23558 5' -59.5 NC_005261.1 + 16743 0.72 0.413726
Target:  5'- cCGCGCGGGCGccgccaUGACCaGCCCCa-GCUc -3'
miRNA:   3'- -GCGCGUCUGC------ACUGG-CGGGGaaCGAc -5'
23558 5' -59.5 NC_005261.1 + 15747 0.71 0.431085
Target:  5'- gCGCGCAGGCc-GACCGCCUCgccGCg- -3'
miRNA:   3'- -GCGCGUCUGcaCUGGCGGGGaa-CGac -5'
23558 5' -59.5 NC_005261.1 + 72134 0.71 0.431085
Target:  5'- uGCGCGggcuggauGACGUGGCCGCgCaucUGCUGg -3'
miRNA:   3'- gCGCGU--------CUGCACUGGCGgGga-ACGAC- -5'
23558 5' -59.5 NC_005261.1 + 30211 0.71 0.431085
Target:  5'- -aCGCGGACGUGcuGCCGCUgCUgggGCUGc -3'
miRNA:   3'- gcGCGUCUGCAC--UGGCGGgGAa--CGAC- -5'
23558 5' -59.5 NC_005261.1 + 133107 0.71 0.439923
Target:  5'- aGCGCcGGCG-GGCCGCCCgCgccgaGCUGg -3'
miRNA:   3'- gCGCGuCUGCaCUGGCGGG-Gaa---CGAC- -5'
23558 5' -59.5 NC_005261.1 + 28590 0.71 0.439923
Target:  5'- aGCGCcGGCG-GGCCGCCCgCgccgaGCUGg -3'
miRNA:   3'- gCGCGuCUGCaCUGGCGGG-Gaa---CGAC- -5'
23558 5' -59.5 NC_005261.1 + 31681 0.71 0.448863
Target:  5'- gCGCGCcggcccGGACGcGGCCGCCgCCgaggaggcggUGCUGg -3'
miRNA:   3'- -GCGCG------UCUGCaCUGGCGG-GGa---------ACGAC- -5'
23558 5' -59.5 NC_005261.1 + 84412 0.71 0.448863
Target:  5'- uCGCGCAGcAUGUcGGCCGCgCCCUccgGCg- -3'
miRNA:   3'- -GCGCGUC-UGCA-CUGGCG-GGGAa--CGac -5'
23558 5' -59.5 NC_005261.1 + 135301 0.71 0.457902
Target:  5'- cCGCGCGaccGGCGUG-UCGCCCUgggcggccgUGCUGg -3'
miRNA:   3'- -GCGCGU---CUGCACuGGCGGGGa--------ACGAC- -5'
23558 5' -59.5 NC_005261.1 + 27432 0.71 0.461545
Target:  5'- cCGCGCAuauuacaaugaguuuGGCGgcgGGCCGCCCCgcgggGCg- -3'
miRNA:   3'- -GCGCGU---------------CUGCa--CUGGCGGGGaa---CGac -5'
23558 5' -59.5 NC_005261.1 + 131949 0.71 0.461545
Target:  5'- cCGCGCAuauuacaaugaguuuGGCGgcgGGCCGCCCCgcgggGCg- -3'
miRNA:   3'- -GCGCGU---------------CUGCa--CUGGCGGGGaa---CGac -5'
23558 5' -59.5 NC_005261.1 + 32204 0.71 0.467038
Target:  5'- gCGCGguGGCGUGccuCCGgUCCUcGCUGu -3'
miRNA:   3'- -GCGCguCUGCACu--GGCgGGGAaCGAC- -5'
23558 5' -59.5 NC_005261.1 + 106117 0.71 0.467038
Target:  5'- gGCGCGGugGcUGGCCGCCUCgcccuccGCg- -3'
miRNA:   3'- gCGCGUCugC-ACUGGCGGGGaa-----CGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.