miRNA display CGI


Results 21 - 40 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23558 5' -59.5 NC_005261.1 + 44753 0.66 0.741947
Target:  5'- uCGcCGCGGGCGacGCgCGCCCCggcaccgcGCUGg -3'
miRNA:   3'- -GC-GCGUCUGCacUG-GCGGGGaa------CGAC- -5'
23558 5' -59.5 NC_005261.1 + 50019 0.66 0.741947
Target:  5'- gCGCGCGGGCGcccaGCCGCCgCgcgacggUGCa- -3'
miRNA:   3'- -GCGCGUCUGCac--UGGCGGgGa------ACGac -5'
23558 5' -59.5 NC_005261.1 + 6028 0.66 0.741947
Target:  5'- gGCGCGGGCGggcccgGACCcaagcaaugcggGCCCCcgcccgcGCUGc -3'
miRNA:   3'- gCGCGUCUGCa-----CUGG------------CGGGGaa-----CGAC- -5'
23558 5' -59.5 NC_005261.1 + 82454 0.66 0.741947
Target:  5'- cCGCGCcGcCGUuGCCGCCCCcgGCc- -3'
miRNA:   3'- -GCGCGuCuGCAcUGGCGGGGaaCGac -5'
23558 5' -59.5 NC_005261.1 + 34684 0.66 0.741947
Target:  5'- gCGCGCu-GCGUGACgguggGCCCCUcGCa- -3'
miRNA:   3'- -GCGCGucUGCACUGg----CGGGGAaCGac -5'
23558 5' -59.5 NC_005261.1 + 52687 0.66 0.741947
Target:  5'- gCGcCGCAGACGgaGCCGCCCgCgcGCg- -3'
miRNA:   3'- -GC-GCGUCUGCacUGGCGGG-GaaCGac -5'
23558 5' -59.5 NC_005261.1 + 48019 0.66 0.732331
Target:  5'- cCGCGCgaGGGCGcuccGCCGCCCCcgcGCUc -3'
miRNA:   3'- -GCGCG--UCUGCac--UGGCGGGGaa-CGAc -5'
23558 5' -59.5 NC_005261.1 + 11266 0.66 0.732331
Target:  5'- cCGCGCGGuucGCGcuGCCGCCCCc-GCg- -3'
miRNA:   3'- -GCGCGUC---UGCacUGGCGGGGaaCGac -5'
23558 5' -59.5 NC_005261.1 + 90829 0.66 0.732331
Target:  5'- cCGCGUgugcacgggGGGCGgcGCCGCCCCgacgGUUGu -3'
miRNA:   3'- -GCGCG---------UCUGCacUGGCGGGGaa--CGAC- -5'
23558 5' -59.5 NC_005261.1 + 12582 0.66 0.732331
Target:  5'- aCGCGCugcuGGgG-GACCGCCUCaaccagcUGCUGg -3'
miRNA:   3'- -GCGCGu---CUgCaCUGGCGGGGa------ACGAC- -5'
23558 5' -59.5 NC_005261.1 + 44724 0.66 0.732331
Target:  5'- gCGCGCAgGGCGcUGcaGCUggGCCCCgaGCUGc -3'
miRNA:   3'- -GCGCGU-CUGC-AC--UGG--CGGGGaaCGAC- -5'
23558 5' -59.5 NC_005261.1 + 20051 0.66 0.732331
Target:  5'- cCG-GCGG-UGUGACCuccaGCCCCUUgucGCUGa -3'
miRNA:   3'- -GCgCGUCuGCACUGG----CGGGGAA---CGAC- -5'
23558 5' -59.5 NC_005261.1 + 131693 0.66 0.732331
Target:  5'- gCGCGCGG-CGcugGACCGCCUCgagaGCc- -3'
miRNA:   3'- -GCGCGUCuGCa--CUGGCGGGGaa--CGac -5'
23558 5' -59.5 NC_005261.1 + 42212 0.66 0.732331
Target:  5'- cCGCGCGGGCGcc-CCGCCgCgaGCUc -3'
miRNA:   3'- -GCGCGUCUGCacuGGCGGgGaaCGAc -5'
23558 5' -59.5 NC_005261.1 + 95306 0.66 0.732331
Target:  5'- gGCGCAGACG-GACUGCgacCCCUa---- -3'
miRNA:   3'- gCGCGUCUGCaCUGGCG---GGGAacgac -5'
23558 5' -59.5 NC_005261.1 + 15248 0.66 0.732331
Target:  5'- cCGCucGCAGugGgccgcGAUCGCCCCggcgGCg- -3'
miRNA:   3'- -GCG--CGUCugCa----CUGGCGGGGaa--CGac -5'
23558 5' -59.5 NC_005261.1 + 134970 0.66 0.731365
Target:  5'- gCGaCGCAGACGgcgagGACggggccgccggggCGCCCCUgGCg- -3'
miRNA:   3'- -GC-GCGUCUGCa----CUG-------------GCGGGGAaCGac -5'
23558 5' -59.5 NC_005261.1 + 70944 0.66 0.722631
Target:  5'- gCGCGCGGcgGCGggggGGCUGCUgCUggccggGCUGg -3'
miRNA:   3'- -GCGCGUC--UGCa---CUGGCGGgGAa-----CGAC- -5'
23558 5' -59.5 NC_005261.1 + 29013 0.66 0.722631
Target:  5'- gCGCGCGG-CGUG-CCGCgCCUacgagcgccUGCg- -3'
miRNA:   3'- -GCGCGUCuGCACuGGCGgGGA---------ACGac -5'
23558 5' -59.5 NC_005261.1 + 18287 0.66 0.722631
Target:  5'- uGCGCGGuacguCGUGACgGUCacgaCCUUGCg- -3'
miRNA:   3'- gCGCGUCu----GCACUGgCGG----GGAACGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.