miRNA display CGI


Results 21 - 40 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23558 5' -59.5 NC_005261.1 + 14767 0.7 0.504478
Target:  5'- cCGCGaCAGGgG-GGCCGCCCCgcGCa- -3'
miRNA:   3'- -GCGC-GUCUgCaCUGGCGGGGaaCGac -5'
23558 5' -59.5 NC_005261.1 + 15248 0.66 0.732331
Target:  5'- cCGCucGCAGugGgccgcGAUCGCCCCggcgGCg- -3'
miRNA:   3'- -GCG--CGUCugCa----CUGGCGGGGaa--CGac -5'
23558 5' -59.5 NC_005261.1 + 15311 0.68 0.632974
Target:  5'- cCGCGCugcucGGCGUGcgcuccaacGCCGUCCCggaggcGCUGg -3'
miRNA:   3'- -GCGCGu----CUGCAC---------UGGCGGGGaa----CGAC- -5'
23558 5' -59.5 NC_005261.1 + 15747 0.71 0.431085
Target:  5'- gCGCGCAGGCc-GACCGCCUCgccGCg- -3'
miRNA:   3'- -GCGCGUCUGcaCUGGCGGGGaa-CGac -5'
23558 5' -59.5 NC_005261.1 + 15892 0.69 0.582756
Target:  5'- aCGCGCGGGCGcuuuaucucCCGCCCCgcGCa- -3'
miRNA:   3'- -GCGCGUCUGCacu------GGCGGGGaaCGac -5'
23558 5' -59.5 NC_005261.1 + 16743 0.72 0.413726
Target:  5'- cCGCGCGGGCGccgccaUGACCaGCCCCa-GCUc -3'
miRNA:   3'- -GCGCGUCUGC------ACUGG-CGGGGaaCGAc -5'
23558 5' -59.5 NC_005261.1 + 17172 0.7 0.504478
Target:  5'- gGCGCGGGCGUGGgCaGCCCUgccGCg- -3'
miRNA:   3'- gCGCGUCUGCACUgG-CGGGGaa-CGac -5'
23558 5' -59.5 NC_005261.1 + 17564 0.66 0.75147
Target:  5'- gCGCGCgagaucacAGGCGcGcCCGCgCCUUGCg- -3'
miRNA:   3'- -GCGCG--------UCUGCaCuGGCGgGGAACGac -5'
23558 5' -59.5 NC_005261.1 + 18287 0.66 0.722631
Target:  5'- uGCGCGGuacguCGUGACgGUCacgaCCUUGCg- -3'
miRNA:   3'- gCGCGUCu----GCACUGgCGG----GGAACGac -5'
23558 5' -59.5 NC_005261.1 + 18426 0.66 0.712856
Target:  5'- aGCGCAGACGUccucGCCGggcagcgcguuCCCCgUGCa- -3'
miRNA:   3'- gCGCGUCUGCAc---UGGC-----------GGGGaACGac -5'
23558 5' -59.5 NC_005261.1 + 19085 0.69 0.562862
Target:  5'- gCGCGCGGGCGgauccgagaUGGCCGCgCCgcgGCc- -3'
miRNA:   3'- -GCGCGUCUGC---------ACUGGCGgGGaa-CGac -5'
23558 5' -59.5 NC_005261.1 + 19507 0.66 0.760891
Target:  5'- aGCGCGacGcCGUGcCCGCCCgCgacGCUGa -3'
miRNA:   3'- gCGCGU--CuGCACuGGCGGG-Gaa-CGAC- -5'
23558 5' -59.5 NC_005261.1 + 19924 0.69 0.552982
Target:  5'- aGCGCGGuGCGgaaGugCGCCCCggUGCc- -3'
miRNA:   3'- gCGCGUC-UGCa--CugGCGGGGa-ACGac -5'
23558 5' -59.5 NC_005261.1 + 20051 0.66 0.732331
Target:  5'- cCG-GCGG-UGUGACCuccaGCCCCUUgucGCUGa -3'
miRNA:   3'- -GCgCGUCuGCACUGG----CGGGGAA---CGAC- -5'
23558 5' -59.5 NC_005261.1 + 20193 0.74 0.29821
Target:  5'- aGCGCGGGCGUcgcGGCCggGCCCCgcgUGCg- -3'
miRNA:   3'- gCGCGUCUGCA---CUGG--CGGGGa--ACGac -5'
23558 5' -59.5 NC_005261.1 + 20447 0.76 0.223429
Target:  5'- aGCGCAGACGUGcCCGCgcggguguggcgcuUCCUUGCg- -3'
miRNA:   3'- gCGCGUCUGCACuGGCG--------------GGGAACGac -5'
23558 5' -59.5 NC_005261.1 + 21005 0.68 0.643045
Target:  5'- gCGCGCcuuggGGGCGUGACaccgaGCCCUggggGCg- -3'
miRNA:   3'- -GCGCG-----UCUGCACUGg----CGGGGaa--CGac -5'
23558 5' -59.5 NC_005261.1 + 21836 0.77 0.19453
Target:  5'- gCGUGCGGGCG-GGCuCGCCCCgcaGCUGa -3'
miRNA:   3'- -GCGCGUCUGCaCUG-GCGGGGaa-CGAC- -5'
23558 5' -59.5 NC_005261.1 + 22312 0.68 0.643045
Target:  5'- gCGCGCGGACGcGGCgGCCggc-GCUGa -3'
miRNA:   3'- -GCGCGUCUGCaCUGgCGGggaaCGAC- -5'
23558 5' -59.5 NC_005261.1 + 22926 0.72 0.372274
Target:  5'- uCGCGCAGACGUGcGCCGaCgCgUUGCg- -3'
miRNA:   3'- -GCGCGUCUGCAC-UGGC-GgGgAACGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.