miRNA display CGI


Results 41 - 60 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23558 5' -59.5 NC_005261.1 + 27020 0.68 0.592757
Target:  5'- gGCGacucgaaGGGCGUGGCgGCCCCacucgGUUGa -3'
miRNA:   3'- gCGCg------UCUGCACUGgCGGGGaa---CGAC- -5'
23558 5' -59.5 NC_005261.1 + 27432 0.71 0.461545
Target:  5'- cCGCGCAuauuacaaugaguuuGGCGgcgGGCCGCCCCgcgggGCg- -3'
miRNA:   3'- -GCGCGU---------------CUGCa--CUGGCGGGGaa---CGac -5'
23558 5' -59.5 NC_005261.1 + 28590 0.71 0.439923
Target:  5'- aGCGCcGGCG-GGCCGCCCgCgccgaGCUGg -3'
miRNA:   3'- gCGCGuCUGCaCUGGCGGG-Gaa---CGAC- -5'
23558 5' -59.5 NC_005261.1 + 29013 0.66 0.722631
Target:  5'- gCGCGCGG-CGUG-CCGCgCCUacgagcgccUGCg- -3'
miRNA:   3'- -GCGCGUCuGCACuGGCGgGGA---------ACGac -5'
23558 5' -59.5 NC_005261.1 + 29251 0.71 0.467038
Target:  5'- cCGCGC-GACG-GGCCGCCgCC--GCUGg -3'
miRNA:   3'- -GCGCGuCUGCaCUGGCGG-GGaaCGAC- -5'
23558 5' -59.5 NC_005261.1 + 30211 0.71 0.431085
Target:  5'- -aCGCGGACGUGcuGCCGCUgCUgggGCUGc -3'
miRNA:   3'- gcGCGUCUGCAC--UGGCGGgGAa--CGAC- -5'
23558 5' -59.5 NC_005261.1 + 30481 0.7 0.485586
Target:  5'- aGCGCugGGGCGUGGCC-CCCCccGCg- -3'
miRNA:   3'- gCGCG--UCUGCACUGGcGGGGaaCGac -5'
23558 5' -59.5 NC_005261.1 + 31057 0.66 0.760891
Target:  5'- aGCGCGG-CGggaGCCGCCgCUgcccgcccgcgUGCUGg -3'
miRNA:   3'- gCGCGUCuGCac-UGGCGGgGA-----------ACGAC- -5'
23558 5' -59.5 NC_005261.1 + 31450 0.66 0.75147
Target:  5'- gGCGCAGACGgcgcuggcgcUGGCCGCCg---GCa- -3'
miRNA:   3'- gCGCGUCUGC----------ACUGGCGGggaaCGac -5'
23558 5' -59.5 NC_005261.1 + 31581 0.68 0.608815
Target:  5'- gCGCGcCGGACGUGAgCGCgCUCggcgcgcagggcgUGCUGc -3'
miRNA:   3'- -GCGC-GUCUGCACUgGCG-GGGa------------ACGAC- -5'
23558 5' -59.5 NC_005261.1 + 31681 0.71 0.448863
Target:  5'- gCGCGCcggcccGGACGcGGCCGCCgCCgaggaggcggUGCUGg -3'
miRNA:   3'- -GCGCG------UCUGCaCUGGCGG-GGa---------ACGAC- -5'
23558 5' -59.5 NC_005261.1 + 31786 0.73 0.348796
Target:  5'- cCGCGCGGACGUGGCCGa-CUggGCg- -3'
miRNA:   3'- -GCGCGUCUGCACUGGCggGGaaCGac -5'
23558 5' -59.5 NC_005261.1 + 32204 0.71 0.467038
Target:  5'- gCGCGguGGCGUGccuCCGgUCCUcGCUGu -3'
miRNA:   3'- -GCGCguCUGCACu--GGCgGGGAaCGAC- -5'
23558 5' -59.5 NC_005261.1 + 33392 0.69 0.533385
Target:  5'- cCGCGCGGuccGCGUGGCgCgGCCCCgcgacgccGCUGc -3'
miRNA:   3'- -GCGCGUC---UGCACUG-G-CGGGGaa------CGAC- -5'
23558 5' -59.5 NC_005261.1 + 33723 0.68 0.622902
Target:  5'- gGgGCGGugGgGGCCuGCCCCUcGCg- -3'
miRNA:   3'- gCgCGUCugCaCUGG-CGGGGAaCGac -5'
23558 5' -59.5 NC_005261.1 + 34137 0.69 0.533385
Target:  5'- uCGCGCGGAgCGccGCCGCCCUguccgccgaGCUGg -3'
miRNA:   3'- -GCGCGUCU-GCacUGGCGGGGaa-------CGAC- -5'
23558 5' -59.5 NC_005261.1 + 34420 0.67 0.663154
Target:  5'- gCGCGCGGccCGcGcCUGCCCCU-GCUGc -3'
miRNA:   3'- -GCGCGUCu-GCaCuGGCGGGGAaCGAC- -5'
23558 5' -59.5 NC_005261.1 + 34684 0.66 0.741947
Target:  5'- gCGCGCu-GCGUGACgguggGCCCCUcGCa- -3'
miRNA:   3'- -GCGCGucUGCACUGg----CGGGGAaCGac -5'
23558 5' -59.5 NC_005261.1 + 34807 0.73 0.348796
Target:  5'- gCGCGCGcGCGUGGCCGCggCCCgcgcggaGCUGg -3'
miRNA:   3'- -GCGCGUcUGCACUGGCG--GGGaa-----CGAC- -5'
23558 5' -59.5 NC_005261.1 + 35854 0.66 0.741947
Target:  5'- gGCGCAccgaaaugGAgGUGGCCGCCUgggUGCg- -3'
miRNA:   3'- gCGCGU--------CUgCACUGGCGGGga-ACGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.