miRNA display CGI


Results 21 - 40 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23558 5' -59.5 NC_005261.1 + 122118 0.7 0.522712
Target:  5'- cCGCGguGaucgcguGCGUGGCCGCCgCCggUGCc- -3'
miRNA:   3'- -GCGCguC-------UGCACUGGCGG-GGa-ACGac -5'
23558 5' -59.5 NC_005261.1 + 121994 0.9 0.02524
Target:  5'- gGCGCGGACGUcGACCGCCCCgaggGCUGg -3'
miRNA:   3'- gCGCGUCUGCA-CUGGCGGGGaa--CGAC- -5'
23558 5' -59.5 NC_005261.1 + 121772 0.69 0.543154
Target:  5'- gCGCGguGGgGUGGCCGCggCCggcggGCUGg -3'
miRNA:   3'- -GCGCguCUgCACUGGCGg-GGaa---CGAC- -5'
23558 5' -59.5 NC_005261.1 + 121265 0.74 0.31206
Target:  5'- cCGcCGCAGACGgggcGGCCGCCCCggccucGCUc -3'
miRNA:   3'- -GC-GCGUCUGCa---CUGGCGGGGaa----CGAc -5'
23558 5' -59.5 NC_005261.1 + 120228 0.68 0.622902
Target:  5'- aGCGCcGACGUGgagcGCCGCUUCgccgcgGCUGc -3'
miRNA:   3'- gCGCGuCUGCAC----UGGCGGGGaa----CGAC- -5'
23558 5' -59.5 NC_005261.1 + 119707 0.67 0.690134
Target:  5'- aCGCGCggcgaugaggaGGGCGUGcccaaccccuucccGCgCGCCCCgcccaugUGCUGu -3'
miRNA:   3'- -GCGCG-----------UCUGCAC--------------UG-GCGGGGa------ACGAC- -5'
23558 5' -59.5 NC_005261.1 + 119585 0.78 0.17625
Target:  5'- aGCGCgAGAcCGUGGCCGCCCCguaUGCc- -3'
miRNA:   3'- gCGCG-UCU-GCACUGGCGGGGa--ACGac -5'
23558 5' -59.5 NC_005261.1 + 118150 0.72 0.396805
Target:  5'- uCGCGCAGACGcUGGCCGUCgCggcgggGCUu -3'
miRNA:   3'- -GCGCGUCUGC-ACUGGCGGgGaa----CGAc -5'
23558 5' -59.5 NC_005261.1 + 118108 0.68 0.643045
Target:  5'- cCGCGCAGACGcUGcGCCGCCg---GCUc -3'
miRNA:   3'- -GCGCGUCUGC-AC-UGGCGGggaaCGAc -5'
23558 5' -59.5 NC_005261.1 + 118020 0.66 0.760891
Target:  5'- gGCaGCGGGCGcggggccuuUGGCgGCCCCgcuucgccUGCUGc -3'
miRNA:   3'- gCG-CGUCUGC---------ACUGgCGGGGa-------ACGAC- -5'
23558 5' -59.5 NC_005261.1 + 117739 0.68 0.592757
Target:  5'- gCGCGCuGGCGccGCCGCCCCcaacGCg- -3'
miRNA:   3'- -GCGCGuCUGCacUGGCGGGGaa--CGac -5'
23558 5' -59.5 NC_005261.1 + 116163 0.68 0.632974
Target:  5'- gCGCGCGGuCGcGGCCGCgucCCCgacgccGCUGg -3'
miRNA:   3'- -GCGCGUCuGCaCUGGCG---GGGaa----CGAC- -5'
23558 5' -59.5 NC_005261.1 + 115482 0.66 0.745767
Target:  5'- aCGCGUGGGcCGccGCCGCCCCgcgcccgacuggcGCUGg -3'
miRNA:   3'- -GCGCGUCU-GCacUGGCGGGGaa-----------CGAC- -5'
23558 5' -59.5 NC_005261.1 + 113042 0.75 0.253499
Target:  5'- cCGCGCGcGGCGUGGCgCGCCaCCgcucGCUGg -3'
miRNA:   3'- -GCGCGU-CUGCACUG-GCGG-GGaa--CGAC- -5'
23558 5' -59.5 NC_005261.1 + 106117 0.71 0.467038
Target:  5'- gGCGCGGugGcUGGCCGCCUCgcccuccGCg- -3'
miRNA:   3'- gCGCGUCugC-ACUGGCGGGGaa-----CGac -5'
23558 5' -59.5 NC_005261.1 + 105456 0.73 0.36433
Target:  5'- aGCGCGGACacGGCCGCCCUcaGCUc -3'
miRNA:   3'- gCGCGUCUGcaCUGGCGGGGaaCGAc -5'
23558 5' -59.5 NC_005261.1 + 105121 0.7 0.494047
Target:  5'- cCGCGCGGGCGcgGGCCGCCggcgcgcgcagguCCUcGCg- -3'
miRNA:   3'- -GCGCGUCUGCa-CUGGCGG-------------GGAaCGac -5'
23558 5' -59.5 NC_005261.1 + 104722 0.69 0.562862
Target:  5'- aGCGguGcCGccGCCGCCCCUggUGCUc -3'
miRNA:   3'- gCGCguCuGCacUGGCGGGGA--ACGAc -5'
23558 5' -59.5 NC_005261.1 + 104686 0.66 0.75147
Target:  5'- aGCGCcuGGGCc--ACCGCCCCgaagagcgGCUGg -3'
miRNA:   3'- gCGCG--UCUGcacUGGCGGGGaa------CGAC- -5'
23558 5' -59.5 NC_005261.1 + 104637 0.68 0.592757
Target:  5'- cCGCGCcGGC---GCCGCCCCUggUGCUc -3'
miRNA:   3'- -GCGCGuCUGcacUGGCGGGGA--ACGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.