miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23558 5' -59.5 NC_005261.1 + 137887 0.69 0.562862
Target:  5'- aGCGguGcCGccGCCGCCCCUggUGCUc -3'
miRNA:   3'- gCGCguCuGCacUGGCGGGGA--ACGAc -5'
23558 5' -59.5 NC_005261.1 + 137802 0.68 0.592757
Target:  5'- cCGCGCcGGC---GCCGCCCCUggUGCUc -3'
miRNA:   3'- -GCGCGuCUGcacUGGCGGGGA--ACGAc -5'
23558 5' -59.5 NC_005261.1 + 136098 0.68 0.608815
Target:  5'- gCGCGcCGGACGUGAgCGCgCUCggcgcgcagggcgUGCUGc -3'
miRNA:   3'- -GCGC-GUCUGCACUgGCG-GGGa------------ACGAC- -5'
23558 5' -59.5 NC_005261.1 + 135654 0.68 0.612838
Target:  5'- uGCGCGGGCGcgGGCgGCCCUc-GCUc -3'
miRNA:   3'- gCGCGUCUGCa-CUGgCGGGGaaCGAc -5'
23558 5' -59.5 NC_005261.1 + 135575 0.66 0.760891
Target:  5'- aGCGCGG-CGggaGCCGCCgCUgcccgcccgcgUGCUGg -3'
miRNA:   3'- gCGCGUCuGCac-UGGCGGgGA-----------ACGAC- -5'
23558 5' -59.5 NC_005261.1 + 135301 0.71 0.457902
Target:  5'- cCGCGCGaccGGCGUG-UCGCCCUgggcggccgUGCUGg -3'
miRNA:   3'- -GCGCGU---CUGCACuGGCGGGGa--------ACGAC- -5'
23558 5' -59.5 NC_005261.1 + 134970 0.66 0.731365
Target:  5'- gCGaCGCAGACGgcgagGACggggccgccggggCGCCCCUgGCg- -3'
miRNA:   3'- -GC-GCGUCUGCa----CUG-------------GCGGGGAaCGac -5'
23558 5' -59.5 NC_005261.1 + 134540 1.09 0.001292
Target:  5'- gCGCGCAGACGUGACCGCCCCUUGCUGg -3'
miRNA:   3'- -GCGCGUCUGCACUGGCGGGGAACGAC- -5'
23558 5' -59.5 NC_005261.1 + 133768 0.71 0.467038
Target:  5'- cCGCGC-GACG-GGCCGCCgCC--GCUGg -3'
miRNA:   3'- -GCGCGuCUGCaCUGGCGG-GGaaCGAC- -5'
23558 5' -59.5 NC_005261.1 + 133107 0.71 0.439923
Target:  5'- aGCGCcGGCG-GGCCGCCCgCgccgaGCUGg -3'
miRNA:   3'- gCGCGuCUGCaCUGGCGGG-Gaa---CGAC- -5'
23558 5' -59.5 NC_005261.1 + 132958 0.7 0.514042
Target:  5'- uGCGCcGACGUGGCCGCCUUcgucGCc- -3'
miRNA:   3'- gCGCGuCUGCACUGGCGGGGaa--CGac -5'
23558 5' -59.5 NC_005261.1 + 132697 0.66 0.75147
Target:  5'- cCGCGUGGcCGUGcCCGUCCCg-GCg- -3'
miRNA:   3'- -GCGCGUCuGCACuGGCGGGGaaCGac -5'
23558 5' -59.5 NC_005261.1 + 132024 0.68 0.643045
Target:  5'- cCGCcgucaCGGACGUGGCCGCCCUg----- -3'
miRNA:   3'- -GCGc----GUCUGCACUGGCGGGGaacgac -5'
23558 5' -59.5 NC_005261.1 + 131949 0.71 0.461545
Target:  5'- cCGCGCAuauuacaaugaguuuGGCGgcgGGCCGCCCCgcgggGCg- -3'
miRNA:   3'- -GCGCGU---------------CUGCa--CUGGCGGGGaa---CGac -5'
23558 5' -59.5 NC_005261.1 + 131693 0.66 0.732331
Target:  5'- gCGCGCGG-CGcugGACCGCCUCgagaGCc- -3'
miRNA:   3'- -GCGCGUCuGCa--CUGGCGGGGaa--CGac -5'
23558 5' -59.5 NC_005261.1 + 130515 0.7 0.491219
Target:  5'- gGCGCAGGCGcUGGCCgaagcgcGCCCgCUcgucgcguuuuaucUGCUGg -3'
miRNA:   3'- gCGCGUCUGC-ACUGG-------CGGG-GA--------------ACGAC- -5'
23558 5' -59.5 NC_005261.1 + 126353 0.77 0.19453
Target:  5'- gCGUGCGGGCG-GGCuCGCCCCgcaGCUGa -3'
miRNA:   3'- -GCGCGUCUGCaCUG-GCGGGGaa-CGAC- -5'
23558 5' -59.5 NC_005261.1 + 125416 0.67 0.673176
Target:  5'- gGCGCGGGCGgcgcucaGGCCGCCCaucccuaGCg- -3'
miRNA:   3'- gCGCGUCUGCa------CUGGCGGGgaa----CGac -5'
23558 5' -59.5 NC_005261.1 + 123486 0.69 0.57677
Target:  5'- gGCGCGG-CGccGAUCGCCCCUgccaccgucgugacGCUGg -3'
miRNA:   3'- gCGCGUCuGCa-CUGGCGGGGAa-------------CGAC- -5'
23558 5' -59.5 NC_005261.1 + 122447 0.68 0.622902
Target:  5'- cCGCGCGGGCGgcgcCCGCCagcggCCUUGUg- -3'
miRNA:   3'- -GCGCGUCUGCacu-GGCGG-----GGAACGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.