miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23558 5' -59.5 NC_005261.1 + 134540 1.09 0.001292
Target:  5'- gCGCGCAGACGUGACCGCCCCUUGCUGg -3'
miRNA:   3'- -GCGCGUCUGCACUGGCGGGGAACGAC- -5'
23558 5' -59.5 NC_005261.1 + 121994 0.9 0.02524
Target:  5'- gGCGCGGACGUcGACCGCCCCgaggGCUGg -3'
miRNA:   3'- gCGCGUCUGCA-CUGGCGGGGaa--CGAC- -5'
23558 5' -59.5 NC_005261.1 + 119585 0.78 0.17625
Target:  5'- aGCGCgAGAcCGUGGCCGCCCCguaUGCc- -3'
miRNA:   3'- gCGCG-UCU-GCACUGGCGGGGa--ACGac -5'
23558 5' -59.5 NC_005261.1 + 21836 0.77 0.19453
Target:  5'- gCGUGCGGGCG-GGCuCGCCCCgcaGCUGa -3'
miRNA:   3'- -GCGCGUCUGCaCUG-GCGGGGaa-CGAC- -5'
23558 5' -59.5 NC_005261.1 + 126353 0.77 0.19453
Target:  5'- gCGUGCGGGCG-GGCuCGCCCCgcaGCUGa -3'
miRNA:   3'- -GCGCGUCUGCaCUG-GCGGGGaa-CGAC- -5'
23558 5' -59.5 NC_005261.1 + 50184 0.77 0.204278
Target:  5'- gGCGCAGGCGcgugacugGACCGCCCCcagGCa- -3'
miRNA:   3'- gCGCGUCUGCa-------CUGGCGGGGaa-CGac -5'
23558 5' -59.5 NC_005261.1 + 20447 0.76 0.223429
Target:  5'- aGCGCAGACGUGcCCGCgcggguguggcgcuUCCUUGCg- -3'
miRNA:   3'- gCGCGUCUGCACuGGCG--------------GGGAACGac -5'
23558 5' -59.5 NC_005261.1 + 39487 0.76 0.230512
Target:  5'- cCGcCGCGGACGaUGAUCGCCCCUcGCc- -3'
miRNA:   3'- -GC-GCGUCUGC-ACUGGCGGGGAaCGac -5'
23558 5' -59.5 NC_005261.1 + 113042 0.75 0.253499
Target:  5'- cCGCGCGcGGCGUGGCgCGCCaCCgcucGCUGg -3'
miRNA:   3'- -GCGCGU-CUGCACUG-GCGG-GGaa--CGAC- -5'
23558 5' -59.5 NC_005261.1 + 63870 0.75 0.265683
Target:  5'- gGgGCGGACGcGGCCGCCCCUUccGCc- -3'
miRNA:   3'- gCgCGUCUGCaCUGGCGGGGAA--CGac -5'
23558 5' -59.5 NC_005261.1 + 70782 0.74 0.284841
Target:  5'- gCGUGCGGGCGgaccGGCUGCCCUUUgggcGCUGg -3'
miRNA:   3'- -GCGCGUCUGCa---CUGGCGGGGAA----CGAC- -5'
23558 5' -59.5 NC_005261.1 + 86364 0.74 0.291466
Target:  5'- cCGCGCGGcgcucACGUGGCCGUagaaggcgcugCCCUUGCg- -3'
miRNA:   3'- -GCGCGUC-----UGCACUGGCG-----------GGGAACGac -5'
23558 5' -59.5 NC_005261.1 + 76015 0.74 0.291466
Target:  5'- gGCGCAGACGcGGCCGCgcgcaCCCUcgcGCUGc -3'
miRNA:   3'- gCGCGUCUGCaCUGGCG-----GGGAa--CGAC- -5'
23558 5' -59.5 NC_005261.1 + 20193 0.74 0.29821
Target:  5'- aGCGCGGGCGUcgcGGCCggGCCCCgcgUGCg- -3'
miRNA:   3'- gCGCGUCUGCA---CUGG--CGGGGa--ACGac -5'
23558 5' -59.5 NC_005261.1 + 75225 0.74 0.305075
Target:  5'- cCGCGCGGGCGcGGCCGCCgagggCCg-GCUGg -3'
miRNA:   3'- -GCGCGUCUGCaCUGGCGG-----GGaaCGAC- -5'
23558 5' -59.5 NC_005261.1 + 121265 0.74 0.31206
Target:  5'- cCGcCGCAGACGgggcGGCCGCCCCggccucGCUc -3'
miRNA:   3'- -GC-GCGUCUGCa---CUGGCGGGGaa----CGAc -5'
23558 5' -59.5 NC_005261.1 + 90307 0.73 0.341208
Target:  5'- gCGCGCgGGACGUGACgGCCgCgcgGUUGg -3'
miRNA:   3'- -GCGCG-UCUGCACUGgCGGgGaa-CGAC- -5'
23558 5' -59.5 NC_005261.1 + 31786 0.73 0.348796
Target:  5'- cCGCGCGGACGUGGCCGa-CUggGCg- -3'
miRNA:   3'- -GCGCGUCUGCACUGGCggGGaaCGac -5'
23558 5' -59.5 NC_005261.1 + 51542 0.73 0.348796
Target:  5'- gGCGCGuACGUgGGCCGCCUCgccggGCUGg -3'
miRNA:   3'- gCGCGUcUGCA-CUGGCGGGGaa---CGAC- -5'
23558 5' -59.5 NC_005261.1 + 34807 0.73 0.348796
Target:  5'- gCGCGCGcGCGUGGCCGCggCCCgcgcggaGCUGg -3'
miRNA:   3'- -GCGCGUcUGCACUGGCG--GGGaa-----CGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.