miRNA display CGI


Results 61 - 80 of 286 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23559 3' -57 NC_005261.1 + 29197 0.66 0.830197
Target:  5'- -cCGCGGcgcccgCGCGGGCG-CG-CGACUGg -3'
miRNA:   3'- aaGCGUCa-----GCGCCUGCcGCuGUUGAC- -5'
23559 3' -57 NC_005261.1 + 29479 0.67 0.804158
Target:  5'- -gCGCGGcgcgcCGCGGACGccGCGGCGccgccGCUGg -3'
miRNA:   3'- aaGCGUCa----GCGCCUGC--CGCUGU-----UGAC- -5'
23559 3' -57 NC_005261.1 + 29825 0.76 0.295506
Target:  5'- -aCGCAGgCGCGGugGcGCGGCuGCUGg -3'
miRNA:   3'- aaGCGUCaGCGCCugC-CGCUGuUGAC- -5'
23559 3' -57 NC_005261.1 + 29905 0.71 0.535296
Target:  5'- -gCGCgGGUCGCGGagcacGCGGCGGCcguCUGg -3'
miRNA:   3'- aaGCG-UCAGCGCC-----UGCCGCUGuu-GAC- -5'
23559 3' -57 NC_005261.1 + 30105 0.74 0.404353
Target:  5'- gUgGCGGUgGCGGGCGGCGu--GCUGu -3'
miRNA:   3'- aAgCGUCAgCGCCUGCCGCuguUGAC- -5'
23559 3' -57 NC_005261.1 + 30372 0.69 0.698428
Target:  5'- -gCGCGGgcggccggCGaGGGCGGCGGCGGCg- -3'
miRNA:   3'- aaGCGUCa-------GCgCCUGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 30407 0.68 0.708506
Target:  5'- --gGCAGagGCGG-CGGCGGCcGCUa -3'
miRNA:   3'- aagCGUCagCGCCuGCCGCUGuUGAc -5'
23559 3' -57 NC_005261.1 + 31110 0.68 0.708506
Target:  5'- -gCGCcGUCGcCGGcGCGGUGGCGcgGCUGg -3'
miRNA:   3'- aaGCGuCAGC-GCC-UGCCGCUGU--UGAC- -5'
23559 3' -57 NC_005261.1 + 31372 0.68 0.71852
Target:  5'- gUCGCAGaUCGCGGACccCGAgGACg- -3'
miRNA:   3'- aAGCGUC-AGCGCCUGccGCUgUUGac -5'
23559 3' -57 NC_005261.1 + 31673 0.75 0.362695
Target:  5'- -cUGCGGcuggcCGCGGcGCGGCGGCGGCUGa -3'
miRNA:   3'- aaGCGUCa----GCGCC-UGCCGCUGUUGAC- -5'
23559 3' -57 NC_005261.1 + 31829 0.68 0.708506
Target:  5'- -cUGCAGcgccgCGCGGaugucgccgacaGCGGCGGCAACg- -3'
miRNA:   3'- aaGCGUCa----GCGCC------------UGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 32239 0.72 0.524383
Target:  5'- -cUGCGGcuggccuUCGCGGGCGGCGuCGACg- -3'
miRNA:   3'- aaGCGUC-------AGCGCCUGCCGCuGUUGac -5'
23559 3' -57 NC_005261.1 + 32297 0.68 0.728459
Target:  5'- -gCGCGcUCGCGGagggcGCGGCGugGGCg- -3'
miRNA:   3'- aaGCGUcAGCGCC-----UGCCGCugUUGac -5'
23559 3' -57 NC_005261.1 + 32321 0.68 0.708506
Target:  5'- -cCGCGGcCGCGGcgccCGGCGugGcCUGg -3'
miRNA:   3'- aaGCGUCaGCGCCu---GCCGCugUuGAC- -5'
23559 3' -57 NC_005261.1 + 32380 0.68 0.738313
Target:  5'- -gUGCAGgCGCGGcGCGGCGGCGu--- -3'
miRNA:   3'- aaGCGUCaGCGCC-UGCCGCUGUugac -5'
23559 3' -57 NC_005261.1 + 33491 0.72 0.525371
Target:  5'- cUCGCGGggccCGCgagcaccagGGGCGGCGGCGGCa- -3'
miRNA:   3'- aAGCGUCa---GCG---------CCUGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 33871 0.68 0.708506
Target:  5'- --gGCGGcuguucUCGCGGGCGGCGcugcGCGACg- -3'
miRNA:   3'- aagCGUC------AGCGCCUGCCGC----UGUUGac -5'
23559 3' -57 NC_005261.1 + 34068 0.66 0.819102
Target:  5'- -gCGCGGcgccCGCGGACGGCGcgguggccgaccugGCGGCc- -3'
miRNA:   3'- aaGCGUCa---GCGCCUGCCGC--------------UGUUGac -5'
23559 3' -57 NC_005261.1 + 34659 0.76 0.302468
Target:  5'- -gCGaCGG-CGCGGGCGGCGGCGGCa- -3'
miRNA:   3'- aaGC-GUCaGCGCCUGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 34844 0.71 0.535296
Target:  5'- -gCGCAGgcggcCGCGGcGCGGCGGCGcgcggccgaGCUGg -3'
miRNA:   3'- aaGCGUCa----GCGCC-UGCCGCUGU---------UGAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.