miRNA display CGI


Results 41 - 60 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23559 3' -57 NC_005261.1 + 18732 0.67 0.795152
Target:  5'- -gUGCuGUUgGCGGGCGGCGGCGccgGCg- -3'
miRNA:   3'- aaGCGuCAG-CGCCUGCCGCUGU---UGac -5'
23559 3' -57 NC_005261.1 + 19184 0.67 0.795152
Target:  5'- -gCGCGGcCGCGGGCgcguuaccgucGGCGACGuccGCUc -3'
miRNA:   3'- aaGCGUCaGCGCCUG-----------CCGCUGU---UGAc -5'
23559 3' -57 NC_005261.1 + 19799 0.7 0.637089
Target:  5'- -cCGCGGcggcgucCGCGG-CGGCGACAGCc- -3'
miRNA:   3'- aaGCGUCa------GCGCCuGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 20286 0.68 0.728459
Target:  5'- gUCGCGGgggCGCGcuuGCGGCagaaaaacGGCGACUGg -3'
miRNA:   3'- aAGCGUCa--GCGCc--UGCCG--------CUGUUGAC- -5'
23559 3' -57 NC_005261.1 + 21197 0.72 0.525371
Target:  5'- -gCGCGGcCGCGGACGcuggccccggccGCGACGGCg- -3'
miRNA:   3'- aaGCGUCaGCGCCUGC------------CGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 21356 0.68 0.738313
Target:  5'- -gCGCGuccUCGCGGGCGGgGGCccACUGa -3'
miRNA:   3'- aaGCGUc--AGCGCCUGCCgCUGu-UGAC- -5'
23559 3' -57 NC_005261.1 + 21396 0.66 0.838524
Target:  5'- cUUCGCGG-CGgGGACGGCcACGuACa- -3'
miRNA:   3'- -AAGCGUCaGCgCCUGCCGcUGU-UGac -5'
23559 3' -57 NC_005261.1 + 21486 0.66 0.832714
Target:  5'- -cCGCAGcgaggCGCcaaaggggcucagcaGGGCGGCGACGucggccaGCUGg -3'
miRNA:   3'- aaGCGUCa----GCG---------------CCUGCCGCUGU-------UGAC- -5'
23559 3' -57 NC_005261.1 + 22314 0.67 0.795152
Target:  5'- -gCGCGGaCGCGG-CGGCcGGC-GCUGa -3'
miRNA:   3'- aaGCGUCaGCGCCuGCCG-CUGuUGAC- -5'
23559 3' -57 NC_005261.1 + 22736 0.68 0.738313
Target:  5'- -gCGcCAGUCGggcgcgGGGCGGCGGCGGCc- -3'
miRNA:   3'- aaGC-GUCAGCg-----CCUGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 22786 0.72 0.486427
Target:  5'- -cCGCGagaaggggguuGUCGCGGcCGGCGGCGGCg- -3'
miRNA:   3'- aaGCGU-----------CAGCGCCuGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 23033 0.68 0.708506
Target:  5'- cUUUGCcGggaGgGGACGGCGGCAGCa- -3'
miRNA:   3'- -AAGCGuCag-CgCCUGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 23171 0.66 0.84666
Target:  5'- --gGCAGgcgCGCcGGgGGCGACAGCg- -3'
miRNA:   3'- aagCGUCa--GCGcCUgCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 23722 0.68 0.738313
Target:  5'- -aCGCGGUCGUGuGcACGGCcucaucGCGGCUGa -3'
miRNA:   3'- aaGCGUCAGCGC-C-UGCCGc-----UGUUGAC- -5'
23559 3' -57 NC_005261.1 + 26080 0.75 0.362695
Target:  5'- --aGCAGaCGCGGcaGCGGCGGCAGCa- -3'
miRNA:   3'- aagCGUCaGCGCC--UGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 26250 0.67 0.813006
Target:  5'- -cCGCGGaUgGgGGGgGGCGGCAACa- -3'
miRNA:   3'- aaGCGUC-AgCgCCUgCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 26598 0.73 0.467473
Target:  5'- --gGCGG-CgGCGGGCGGCGGCGGCa- -3'
miRNA:   3'- aagCGUCaG-CGCCUGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 26881 0.67 0.785998
Target:  5'- --aGCAGacgCGCGGuCGGCGcCGGCUc -3'
miRNA:   3'- aagCGUCa--GCGCCuGCCGCuGUUGAc -5'
23559 3' -57 NC_005261.1 + 27339 0.69 0.688293
Target:  5'- gUCGCAGUcgcccagcCGCGaGACGG-GGCAGCg- -3'
miRNA:   3'- aAGCGUCA--------GCGC-CUGCCgCUGUUGac -5'
23559 3' -57 NC_005261.1 + 28796 0.69 0.678111
Target:  5'- cUCGCGGcCGCGG-CGGaGGCAGCc- -3'
miRNA:   3'- aAGCGUCaGCGCCuGCCgCUGUUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.