miRNA display CGI


Results 41 - 60 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23559 3' -57 NC_005261.1 + 117142 0.72 0.515517
Target:  5'- -gCGCGGUCGCGGAacguauugccgGGCGACAGg-- -3'
miRNA:   3'- aaGCGUCAGCGCCUg----------CCGCUGUUgac -5'
23559 3' -57 NC_005261.1 + 117020 0.66 0.854601
Target:  5'- -cCGCcGUCGCGGcCGGgGcCAGCg- -3'
miRNA:   3'- aaGCGuCAGCGCCuGCCgCuGUUGac -5'
23559 3' -57 NC_005261.1 + 116165 0.69 0.667891
Target:  5'- -gCGCGGUCGCGGccGCGucccCGACGccGCUGg -3'
miRNA:   3'- aaGCGUCAGCGCC--UGCc---GCUGU--UGAC- -5'
23559 3' -57 NC_005261.1 + 115471 0.66 0.821689
Target:  5'- cUCGguguCGGUCGCGGGCucggccGCGGCGGCg- -3'
miRNA:   3'- aAGC----GUCAGCGCCUGc-----CGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 111717 0.67 0.813006
Target:  5'- -gCGCAGUCGCGGgucgACGaGCG-CGugUa -3'
miRNA:   3'- aaGCGUCAGCGCC----UGC-CGCuGUugAc -5'
23559 3' -57 NC_005261.1 + 109954 0.78 0.232667
Target:  5'- -cCGCGGcCGCGG-CGGCGGCAACa- -3'
miRNA:   3'- aaGCGUCaGCGCCuGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 109410 0.7 0.647371
Target:  5'- -cCGCGGcCGCcucGGcuuCGGCGGCGGCUGc -3'
miRNA:   3'- aaGCGUCaGCG---CCu--GCCGCUGUUGAC- -5'
23559 3' -57 NC_005261.1 + 109332 0.7 0.637089
Target:  5'- -gCGCGGcCGCGGGguCGGCGGCcGCg- -3'
miRNA:   3'- aaGCGUCaGCGCCU--GCCGCUGuUGac -5'
23559 3' -57 NC_005261.1 + 109178 0.66 0.838524
Target:  5'- -gUGuCGGcCGCGG-CGGCGGCGGCc- -3'
miRNA:   3'- aaGC-GUCaGCGCCuGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 108911 0.72 0.486427
Target:  5'- -aCGCGG-C-CGGGCGGCGGCGGCg- -3'
miRNA:   3'- aaGCGUCaGcGCCUGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 108512 0.7 0.616521
Target:  5'- gUCGCAGUCGUa-GCGGCGGCucaUGg -3'
miRNA:   3'- aAGCGUCAGCGccUGCCGCUGuugAC- -5'
23559 3' -57 NC_005261.1 + 108340 0.67 0.767279
Target:  5'- -gCGCuGcCGCGGGCccgggcgcuGGCGGCAGCg- -3'
miRNA:   3'- aaGCGuCaGCGCCUG---------CCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 108109 0.66 0.84666
Target:  5'- -cCGC-GUCGCGGGCcGCGccaaGCAGCUc -3'
miRNA:   3'- aaGCGuCAGCGCCUGcCGC----UGUUGAc -5'
23559 3' -57 NC_005261.1 + 107164 0.67 0.804158
Target:  5'- -aCGCGG--GCGGGCaGCGGCGGCUc -3'
miRNA:   3'- aaGCGUCagCGCCUGcCGCUGUUGAc -5'
23559 3' -57 NC_005261.1 + 105921 0.71 0.575586
Target:  5'- -cCGCGGcCGCGGcgGCGGCGGgGGCg- -3'
miRNA:   3'- aaGCGUCaGCGCC--UGCCGCUgUUGac -5'
23559 3' -57 NC_005261.1 + 105551 0.7 0.600097
Target:  5'- uUUUGCGGagggCgGCGGGCGGCGGCGuuagcggcgcgggggGCUGg -3'
miRNA:   3'- -AAGCGUCa---G-CGCCUGCCGCUGU---------------UGAC- -5'
23559 3' -57 NC_005261.1 + 105229 0.68 0.728459
Target:  5'- -cCGCGGcCGCGGccgugaucuGCGGCGGCAuccGCg- -3'
miRNA:   3'- aaGCGUCaGCGCC---------UGCCGCUGU---UGac -5'
23559 3' -57 NC_005261.1 + 105058 0.68 0.748074
Target:  5'- --gGCAGg-GCGGACGGCGGCucgGCc- -3'
miRNA:   3'- aagCGUCagCGCCUGCCGCUGu--UGac -5'
23559 3' -57 NC_005261.1 + 104897 0.74 0.404353
Target:  5'- --gGCGGUgGCGGcgGCGGCGGCGGCg- -3'
miRNA:   3'- aagCGUCAgCGCC--UGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 104820 0.71 0.565437
Target:  5'- -cUGCGG-CgGCGGcuGCGGCGGCGGCUGc -3'
miRNA:   3'- aaGCGUCaG-CGCC--UGCCGCUGUUGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.