miRNA display CGI


Results 21 - 40 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23559 3' -57 NC_005261.1 + 130767 0.67 0.813006
Target:  5'- -cCGCGGaUgGgGGGgGGCGGCAACa- -3'
miRNA:   3'- aaGCGUC-AgCgCCUgCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 130598 0.75 0.362695
Target:  5'- --aGCAGaCGCGGcaGCGGCGGCAGCa- -3'
miRNA:   3'- aagCGUCaGCGCC--UGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 129648 0.66 0.821689
Target:  5'- ---aCGGUgGCGG-CGGCGGCGGCa- -3'
miRNA:   3'- aagcGUCAgCGCCuGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 127689 0.66 0.84666
Target:  5'- --gGCAGgcgCGCcGGgGGCGACAGCg- -3'
miRNA:   3'- aagCGUCa--GCGcCUgCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 127668 0.68 0.708506
Target:  5'- gUUCGgGG-CG-GGACGGCGGCGGCc- -3'
miRNA:   3'- -AAGCgUCaGCgCCUGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 127551 0.68 0.708506
Target:  5'- cUUUGCcGggaGgGGACGGCGGCAGCa- -3'
miRNA:   3'- -AAGCGuCag-CgCCUGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 127303 0.72 0.486427
Target:  5'- -cCGCGagaaggggguuGUCGCGGcCGGCGGCGGCg- -3'
miRNA:   3'- aaGCGU-----------CAGCGCCuGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 127253 0.68 0.738313
Target:  5'- -gCGcCAGUCGggcgcgGGGCGGCGGCGGCc- -3'
miRNA:   3'- aaGC-GUCAGCg-----CCUGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 126952 0.66 0.838524
Target:  5'- -gCGcCGGgCGCGGG-GGCGGCAGCg- -3'
miRNA:   3'- aaGC-GUCaGCGCCUgCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 124325 0.71 0.555334
Target:  5'- aUCGCGGaCGUgaccgaggaGGACGGCGGCGugUa -3'
miRNA:   3'- aAGCGUCaGCG---------CCUGCCGCUGUugAc -5'
23559 3' -57 NC_005261.1 + 123692 0.67 0.776704
Target:  5'- -gCGUGGUCGcCGGGCGGCcGCGccaccgccggGCUGu -3'
miRNA:   3'- aaGCGUCAGC-GCCUGCCGcUGU----------UGAC- -5'
23559 3' -57 NC_005261.1 + 122440 0.66 0.84666
Target:  5'- -gCGCuGgccgCGCGGGCGGCGcccgcCAGCg- -3'
miRNA:   3'- aaGCGuCa---GCGCCUGCCGCu----GUUGac -5'
23559 3' -57 NC_005261.1 + 122342 0.66 0.84666
Target:  5'- cUCGCAGagcUCGCcuGGCGGCcGCGGCUc -3'
miRNA:   3'- aAGCGUC---AGCGc-CUGCCGcUGUUGAc -5'
23559 3' -57 NC_005261.1 + 121772 0.66 0.84666
Target:  5'- -gCGCGGUgggguggcCGCGGcCGGCGG--GCUGg -3'
miRNA:   3'- aaGCGUCA--------GCGCCuGCCGCUguUGAC- -5'
23559 3' -57 NC_005261.1 + 121377 0.68 0.757733
Target:  5'- -cUGCAGgcgcccCGCGG-CGGCGGCGcCUGc -3'
miRNA:   3'- aaGCGUCa-----GCGCCuGCCGCUGUuGAC- -5'
23559 3' -57 NC_005261.1 + 121053 0.7 0.637089
Target:  5'- gUCGCGGUUGUGGcgcgcggugugcGCGGCGcCGGCg- -3'
miRNA:   3'- aAGCGUCAGCGCC------------UGCCGCuGUUGac -5'
23559 3' -57 NC_005261.1 + 119795 0.75 0.362695
Target:  5'- -cCGCAG-CGCGGAgcugGGCGGCAACUa -3'
miRNA:   3'- aaGCGUCaGCGCCUg---CCGCUGUUGAc -5'
23559 3' -57 NC_005261.1 + 118846 0.68 0.748074
Target:  5'- -cUGCGG-CGCGGAgGGCGGCGc--- -3'
miRNA:   3'- aaGCGUCaGCGCCUgCCGCUGUugac -5'
23559 3' -57 NC_005261.1 + 117590 0.66 0.845855
Target:  5'- --gGCGGU-GCGGGCGGCGAaccgggcCGGCa- -3'
miRNA:   3'- aagCGUCAgCGCCUGCCGCU-------GUUGac -5'
23559 3' -57 NC_005261.1 + 117455 0.66 0.838524
Target:  5'- -cUGCAGaaggUGCGGcagguCGGCGGCGACg- -3'
miRNA:   3'- aaGCGUCa---GCGCCu----GCCGCUGUUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.