miRNA display CGI


Results 21 - 40 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23559 3' -57 NC_005261.1 + 79896 0.66 0.821689
Target:  5'- -gCGCGGcucCGCGaGGCGGUgcucgGGCGGCUGg -3'
miRNA:   3'- aaGCGUCa--GCGC-CUGCCG-----CUGUUGAC- -5'
23559 3' -57 NC_005261.1 + 85899 0.66 0.830197
Target:  5'- -gCGCGGcgggCGCcaaGGACGGCGAgGAgUGc -3'
miRNA:   3'- aaGCGUCa---GCG---CCUGCCGCUgUUgAC- -5'
23559 3' -57 NC_005261.1 + 39334 0.66 0.854601
Target:  5'- -gCGCcGcCGCGGccaagcugcgcGCGGCGGCAGCc- -3'
miRNA:   3'- aaGCGuCaGCGCC-----------UGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 122440 0.66 0.84666
Target:  5'- -gCGCuGgccgCGCGGGCGGCGcccgcCAGCg- -3'
miRNA:   3'- aaGCGuCa---GCGCCUGCCGCu----GUUGac -5'
23559 3' -57 NC_005261.1 + 53653 0.66 0.854601
Target:  5'- aUCGCAGgcggccuggcCGCGGgucGCGGCcucGACAGCg- -3'
miRNA:   3'- aAGCGUCa---------GCGCC---UGCCG---CUGUUGac -5'
23559 3' -57 NC_005261.1 + 4661 0.66 0.838524
Target:  5'- -gUGuCGGcCGCGG-CGGCGGCGGCc- -3'
miRNA:   3'- aaGC-GUCaGCGCCuGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 12345 0.66 0.854601
Target:  5'- -gCGCGGcCGCcgccGCGGCGGCAACc- -3'
miRNA:   3'- aaGCGUCaGCGcc--UGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 117455 0.66 0.838524
Target:  5'- -cUGCAGaaggUGCGGcagguCGGCGGCGACg- -3'
miRNA:   3'- aaGCGUCa---GCGCCu----GCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 11673 0.66 0.838524
Target:  5'- -cUGCAGcauuugCGCGcGACGGCGGCGcgUGg -3'
miRNA:   3'- aaGCGUCa-----GCGC-CUGCCGCUGUugAC- -5'
23559 3' -57 NC_005261.1 + 90544 0.66 0.84666
Target:  5'- -aCGCGGcgcCGCGGGCGGCcgu-GCUGc -3'
miRNA:   3'- aaGCGUCa--GCGCCUGCCGcuguUGAC- -5'
23559 3' -57 NC_005261.1 + 3592 0.66 0.84666
Target:  5'- -cCGC-GUCGCGGGCcGCGccaaGCAGCUc -3'
miRNA:   3'- aaGCGuCAGCGCCUGcCGC----UGUUGAc -5'
23559 3' -57 NC_005261.1 + 93418 0.66 0.84666
Target:  5'- -cUGCGGcUGCGGcuGCGGCuGCGGCUGc -3'
miRNA:   3'- aaGCGUCaGCGCC--UGCCGcUGUUGAC- -5'
23559 3' -57 NC_005261.1 + 34068 0.66 0.819102
Target:  5'- -gCGCGGcgccCGCGGACGGCGcgguggccgaccugGCGGCc- -3'
miRNA:   3'- aaGCGUCa---GCGCCUGCCGC--------------UGUUGac -5'
23559 3' -57 NC_005261.1 + 88172 0.66 0.83355
Target:  5'- -aCGCGGcagcgggcuucUCGCGG-CGGCGcugcaccgucgcgcgGCGGCUGg -3'
miRNA:   3'- aaGCGUC-----------AGCGCCuGCCGC---------------UGUUGAC- -5'
23559 3' -57 NC_005261.1 + 127689 0.66 0.84666
Target:  5'- --gGCAGgcgCGCcGGgGGCGACAGCg- -3'
miRNA:   3'- aagCGUCa--GCGcCUgCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 79971 0.66 0.821689
Target:  5'- -gCGCGGcgagCGCGGcGCGGCG-CGGCa- -3'
miRNA:   3'- aaGCGUCa---GCGCC-UGCCGCuGUUGac -5'
23559 3' -57 NC_005261.1 + 44338 0.66 0.84666
Target:  5'- -cCGCAGUCGC---UGGCGACcgcgcuGCUGa -3'
miRNA:   3'- aaGCGUCAGCGccuGCCGCUGu-----UGAC- -5'
23559 3' -57 NC_005261.1 + 121772 0.66 0.84666
Target:  5'- -gCGCGGUgggguggcCGCGGcCGGCGG--GCUGg -3'
miRNA:   3'- aaGCGUCA--------GCGCCuGCCGCUguUGAC- -5'
23559 3' -57 NC_005261.1 + 13395 0.66 0.84666
Target:  5'- -aCGCGGUCuCGGAgCGGUagGGCGACg- -3'
miRNA:   3'- aaGCGUCAGcGCCU-GCCG--CUGUUGac -5'
23559 3' -57 NC_005261.1 + 117590 0.66 0.845855
Target:  5'- --gGCGGU-GCGGGCGGCGAaccgggcCGGCa- -3'
miRNA:   3'- aagCGUCAgCGCCUGCCGCU-------GUUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.