Results 1 - 20 of 286 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23559 | 3' | -57 | NC_005261.1 | + | 80578 | 0.66 | 0.837699 |
Target: 5'- -gCGCAGucUCGgGGGCgugcucgGGCGGCuGCUGa -3' miRNA: 3'- aaGCGUC--AGCgCCUG-------CCGCUGuUGAC- -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 122440 | 0.66 | 0.84666 |
Target: 5'- -gCGCuGgccgCGCGGGCGGCGcccgcCAGCg- -3' miRNA: 3'- aaGCGuCa---GCGCCUGCCGCu----GUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 17958 | 0.66 | 0.84666 |
Target: 5'- -gCGCAGcCggGCGGGCGGUaGACGGCc- -3' miRNA: 3'- aaGCGUCaG--CGCCUGCCG-CUGUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 71964 | 0.66 | 0.838524 |
Target: 5'- -cCGCGGgCGCccgguGGACGGCGu--GCUGg -3' miRNA: 3'- aaGCGUCaGCG-----CCUGCCGCuguUGAC- -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 5817 | 0.66 | 0.84666 |
Target: 5'- --aGCAGgggugCGCGGGCcaggcgucGGCGGCGGCc- -3' miRNA: 3'- aagCGUCa----GCGCCUG--------CCGCUGUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 109178 | 0.66 | 0.838524 |
Target: 5'- -gUGuCGGcCGCGG-CGGCGGCGGCc- -3' miRNA: 3'- aaGC-GUCaGCGCCuGCCGCUGUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 21396 | 0.66 | 0.838524 |
Target: 5'- cUUCGCGG-CGgGGACGGCcACGuACa- -3' miRNA: 3'- -AAGCGUCaGCgCCUGCCGcUGU-UGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 117590 | 0.66 | 0.845855 |
Target: 5'- --gGCGGU-GCGGGCGGCGAaccgggcCGGCa- -3' miRNA: 3'- aagCGUCAgCGCCUGCCGCU-------GUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 69694 | 0.66 | 0.821689 |
Target: 5'- --aGCAGggggcgCGCGGGCGcCGGCGGCg- -3' miRNA: 3'- aagCGUCa-----GCGCCUGCcGCUGUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 44338 | 0.66 | 0.84666 |
Target: 5'- -cCGCAGUCGC---UGGCGACcgcgcuGCUGa -3' miRNA: 3'- aaGCGUCAGCGccuGCCGCUGu-----UGAC- -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 11673 | 0.66 | 0.838524 |
Target: 5'- -cUGCAGcauuugCGCGcGACGGCGGCGcgUGg -3' miRNA: 3'- aaGCGUCa-----GCGC-CUGCCGCUGUugAC- -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 79971 | 0.66 | 0.821689 |
Target: 5'- -gCGCGGcgagCGCGGcGCGGCG-CGGCa- -3' miRNA: 3'- aaGCGUCa---GCGCC-UGCCGCuGUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 45677 | 0.66 | 0.838524 |
Target: 5'- -gCGCGGggCGCGcGCGG-GACAGCUa -3' miRNA: 3'- aaGCGUCa-GCGCcUGCCgCUGUUGAc -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 35660 | 0.66 | 0.830197 |
Target: 5'- -cCGCcGaCGCGGACGGCGA-GGCg- -3' miRNA: 3'- aaGCGuCaGCGCCUGCCGCUgUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 90544 | 0.66 | 0.84666 |
Target: 5'- -aCGCGGcgcCGCGGGCGGCcgu-GCUGc -3' miRNA: 3'- aaGCGUCa--GCGCCUGCCGcuguUGAC- -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 79896 | 0.66 | 0.821689 |
Target: 5'- -gCGCGGcucCGCGaGGCGGUgcucgGGCGGCUGg -3' miRNA: 3'- aaGCGUCa--GCGC-CUGCCG-----CUGUUGAC- -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 21486 | 0.66 | 0.832714 |
Target: 5'- -cCGCAGcgaggCGCcaaaggggcucagcaGGGCGGCGACGucggccaGCUGg -3' miRNA: 3'- aaGCGUCa----GCG---------------CCUGCCGCUGU-------UGAC- -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 34068 | 0.66 | 0.819102 |
Target: 5'- -gCGCGGcgccCGCGGACGGCGcgguggccgaccugGCGGCc- -3' miRNA: 3'- aaGCGUCa---GCGCCUGCCGC--------------UGUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 85899 | 0.66 | 0.830197 |
Target: 5'- -gCGCGGcgggCGCcaaGGACGGCGAgGAgUGc -3' miRNA: 3'- aaGCGUCa---GCG---CCUGCCGCUgUUgAC- -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 88172 | 0.66 | 0.83355 |
Target: 5'- -aCGCGGcagcgggcuucUCGCGG-CGGCGcugcaccgucgcgcgGCGGCUGg -3' miRNA: 3'- aaGCGUC-----------AGCGCCuGCCGC---------------UGUUGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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