miRNA display CGI


Results 1 - 20 of 286 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23559 3' -57 NC_005261.1 + 80578 0.66 0.837699
Target:  5'- -gCGCAGucUCGgGGGCgugcucgGGCGGCuGCUGa -3'
miRNA:   3'- aaGCGUC--AGCgCCUG-------CCGCUGuUGAC- -5'
23559 3' -57 NC_005261.1 + 122440 0.66 0.84666
Target:  5'- -gCGCuGgccgCGCGGGCGGCGcccgcCAGCg- -3'
miRNA:   3'- aaGCGuCa---GCGCCUGCCGCu----GUUGac -5'
23559 3' -57 NC_005261.1 + 17958 0.66 0.84666
Target:  5'- -gCGCAGcCggGCGGGCGGUaGACGGCc- -3'
miRNA:   3'- aaGCGUCaG--CGCCUGCCG-CUGUUGac -5'
23559 3' -57 NC_005261.1 + 71964 0.66 0.838524
Target:  5'- -cCGCGGgCGCccgguGGACGGCGu--GCUGg -3'
miRNA:   3'- aaGCGUCaGCG-----CCUGCCGCuguUGAC- -5'
23559 3' -57 NC_005261.1 + 5817 0.66 0.84666
Target:  5'- --aGCAGgggugCGCGGGCcaggcgucGGCGGCGGCc- -3'
miRNA:   3'- aagCGUCa----GCGCCUG--------CCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 109178 0.66 0.838524
Target:  5'- -gUGuCGGcCGCGG-CGGCGGCGGCc- -3'
miRNA:   3'- aaGC-GUCaGCGCCuGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 21396 0.66 0.838524
Target:  5'- cUUCGCGG-CGgGGACGGCcACGuACa- -3'
miRNA:   3'- -AAGCGUCaGCgCCUGCCGcUGU-UGac -5'
23559 3' -57 NC_005261.1 + 117590 0.66 0.845855
Target:  5'- --gGCGGU-GCGGGCGGCGAaccgggcCGGCa- -3'
miRNA:   3'- aagCGUCAgCGCCUGCCGCU-------GUUGac -5'
23559 3' -57 NC_005261.1 + 69694 0.66 0.821689
Target:  5'- --aGCAGggggcgCGCGGGCGcCGGCGGCg- -3'
miRNA:   3'- aagCGUCa-----GCGCCUGCcGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 44338 0.66 0.84666
Target:  5'- -cCGCAGUCGC---UGGCGACcgcgcuGCUGa -3'
miRNA:   3'- aaGCGUCAGCGccuGCCGCUGu-----UGAC- -5'
23559 3' -57 NC_005261.1 + 11673 0.66 0.838524
Target:  5'- -cUGCAGcauuugCGCGcGACGGCGGCGcgUGg -3'
miRNA:   3'- aaGCGUCa-----GCGC-CUGCCGCUGUugAC- -5'
23559 3' -57 NC_005261.1 + 79971 0.66 0.821689
Target:  5'- -gCGCGGcgagCGCGGcGCGGCG-CGGCa- -3'
miRNA:   3'- aaGCGUCa---GCGCC-UGCCGCuGUUGac -5'
23559 3' -57 NC_005261.1 + 45677 0.66 0.838524
Target:  5'- -gCGCGGggCGCGcGCGG-GACAGCUa -3'
miRNA:   3'- aaGCGUCa-GCGCcUGCCgCUGUUGAc -5'
23559 3' -57 NC_005261.1 + 35660 0.66 0.830197
Target:  5'- -cCGCcGaCGCGGACGGCGA-GGCg- -3'
miRNA:   3'- aaGCGuCaGCGCCUGCCGCUgUUGac -5'
23559 3' -57 NC_005261.1 + 90544 0.66 0.84666
Target:  5'- -aCGCGGcgcCGCGGGCGGCcgu-GCUGc -3'
miRNA:   3'- aaGCGUCa--GCGCCUGCCGcuguUGAC- -5'
23559 3' -57 NC_005261.1 + 79896 0.66 0.821689
Target:  5'- -gCGCGGcucCGCGaGGCGGUgcucgGGCGGCUGg -3'
miRNA:   3'- aaGCGUCa--GCGC-CUGCCG-----CUGUUGAC- -5'
23559 3' -57 NC_005261.1 + 21486 0.66 0.832714
Target:  5'- -cCGCAGcgaggCGCcaaaggggcucagcaGGGCGGCGACGucggccaGCUGg -3'
miRNA:   3'- aaGCGUCa----GCG---------------CCUGCCGCUGU-------UGAC- -5'
23559 3' -57 NC_005261.1 + 34068 0.66 0.819102
Target:  5'- -gCGCGGcgccCGCGGACGGCGcgguggccgaccugGCGGCc- -3'
miRNA:   3'- aaGCGUCa---GCGCCUGCCGC--------------UGUUGac -5'
23559 3' -57 NC_005261.1 + 85899 0.66 0.830197
Target:  5'- -gCGCGGcgggCGCcaaGGACGGCGAgGAgUGc -3'
miRNA:   3'- aaGCGUCa---GCG---CCUGCCGCUgUUgAC- -5'
23559 3' -57 NC_005261.1 + 88172 0.66 0.83355
Target:  5'- -aCGCGGcagcgggcuucUCGCGG-CGGCGcugcaccgucgcgcgGCGGCUGg -3'
miRNA:   3'- aaGCGUC-----------AGCGCCuGCCGC---------------UGUUGAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.