miRNA display CGI


Results 1 - 20 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23559 3' -57 NC_005261.1 + 229 0.72 0.486427
Target:  5'- cUCGCGGgccccgcgaGCGGgcccggcuGCGGCGGCGGCUGc -3'
miRNA:   3'- aAGCGUCag-------CGCC--------UGCCGCUGUUGAC- -5'
23559 3' -57 NC_005261.1 + 279 0.71 0.565437
Target:  5'- -cUGCGG-CgGCGGcuGCGGCGGCGGCUGc -3'
miRNA:   3'- aaGCGUCaG-CGCC--UGCCGCUGUUGAC- -5'
23559 3' -57 NC_005261.1 + 315 0.71 0.565437
Target:  5'- -cUGCGG-CgGCGGcuGCGGCGGCGGCUGc -3'
miRNA:   3'- aaGCGUCaG-CGCC--UGCCGCUGUUGAC- -5'
23559 3' -57 NC_005261.1 + 325 0.72 0.525371
Target:  5'- cUCGCGGggccCGCgagcaccagGGGCGGCGGCGGCa- -3'
miRNA:   3'- aAGCGUCa---GCG---------CCUGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 380 0.74 0.404353
Target:  5'- --gGCGGUgGCGGcgGCGGCGGCGGCg- -3'
miRNA:   3'- aagCGUCAgCGCC--UGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 541 0.68 0.748074
Target:  5'- --gGCAGg-GCGGACGGCGGCucgGCc- -3'
miRNA:   3'- aagCGUCagCGCCUGCCGCUGu--UGac -5'
23559 3' -57 NC_005261.1 + 1033 0.7 0.600097
Target:  5'- uUUUGCGGagggCgGCGGGCGGCGGCGuuagcggcgcgggggGCUGg -3'
miRNA:   3'- -AAGCGUCa---G-CGCCUGCCGCUGU---------------UGAC- -5'
23559 3' -57 NC_005261.1 + 1404 0.71 0.575586
Target:  5'- -cCGCGGcCGCGGcgGCGGCGGgGGCg- -3'
miRNA:   3'- aaGCGUCaGCGCC--UGCCGCUgUUGac -5'
23559 3' -57 NC_005261.1 + 2647 0.67 0.804158
Target:  5'- -aCGCGG--GCGGGCaGCGGCGGCUc -3'
miRNA:   3'- aaGCGUCagCGCCUGcCGCUGUUGAc -5'
23559 3' -57 NC_005261.1 + 3550 0.72 0.515517
Target:  5'- gUCGCAGUCGuCGGGuccUGGCGGCuGgUGg -3'
miRNA:   3'- aAGCGUCAGC-GCCU---GCCGCUGuUgAC- -5'
23559 3' -57 NC_005261.1 + 3592 0.66 0.84666
Target:  5'- -cCGC-GUCGCGGGCcGCGccaaGCAGCUc -3'
miRNA:   3'- aaGCGuCAGCGCCUGcCGC----UGUUGAc -5'
23559 3' -57 NC_005261.1 + 3823 0.67 0.767279
Target:  5'- -gCGCuGcCGCGGGCccgggcgcuGGCGGCAGCg- -3'
miRNA:   3'- aaGCGuCaGCGCCUG---------CCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 3994 0.7 0.616521
Target:  5'- gUCGCAGUCGUa-GCGGCGGCucaUGg -3'
miRNA:   3'- aAGCGUCAGCGccUGCCGCUGuugAC- -5'
23559 3' -57 NC_005261.1 + 4394 0.72 0.486427
Target:  5'- -aCGCGG-C-CGGGCGGCGGCGGCg- -3'
miRNA:   3'- aaGCGUCaGcGCCUGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 4661 0.66 0.838524
Target:  5'- -gUGuCGGcCGCGG-CGGCGGCGGCc- -3'
miRNA:   3'- aaGC-GUCaGCGCCuGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 4893 0.7 0.647371
Target:  5'- -cCGCGGcCGCcucGGcuuCGGCGGCGGCUGc -3'
miRNA:   3'- aaGCGUCaGCG---CCu--GCCGCUGUUGAC- -5'
23559 3' -57 NC_005261.1 + 5063 0.69 0.698428
Target:  5'- -cCGCGGUUGUcGGCGGCGACGccgACg- -3'
miRNA:   3'- aaGCGUCAGCGcCUGCCGCUGU---UGac -5'
23559 3' -57 NC_005261.1 + 5251 0.71 0.565437
Target:  5'- -gUGCgGGUCGCGGugcGCGGCGACGAa-- -3'
miRNA:   3'- aaGCG-UCAGCGCC---UGCCGCUGUUgac -5'
23559 3' -57 NC_005261.1 + 5437 0.78 0.232667
Target:  5'- -cCGCGGcCGCGG-CGGCGGCAACa- -3'
miRNA:   3'- aaGCGUCaGCGCCuGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 5737 0.72 0.525371
Target:  5'- gUCGCGGUCGggcgcgucccaGGACGGCGAgGcGCUGc -3'
miRNA:   3'- aAGCGUCAGCg----------CCUGCCGCUgU-UGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.