miRNA display CGI


Results 1 - 20 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23559 3' -57 NC_005261.1 + 138212 0.68 0.748074
Target:  5'- --gGCAGg-GCGGACGGCGGCucgGCc- -3'
miRNA:   3'- aagCGUCagCGCCUGCCGCUGu--UGac -5'
23559 3' -57 NC_005261.1 + 138051 0.74 0.404353
Target:  5'- --gGCGGUgGCGGcgGCGGCGGCGGCg- -3'
miRNA:   3'- aagCGUCAgCGCC--UGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 138008 0.72 0.525371
Target:  5'- cUCGCGGggccCGCgagcaccagGGGCGGCGGCGGCa- -3'
miRNA:   3'- aAGCGUCa---GCG---------CCUGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 137987 0.7 0.626803
Target:  5'- --nGCGG-CgGCGGcuGCGGCGGCGGCUGc -3'
miRNA:   3'- aagCGUCaG-CGCC--UGCCGCUGUUGAC- -5'
23559 3' -57 NC_005261.1 + 137962 0.71 0.565437
Target:  5'- -cUGCGG-CgGCGGcuGCGGCGGCGGCUGc -3'
miRNA:   3'- aaGCGUCaG-CGCC--UGCCGCUGUUGAC- -5'
23559 3' -57 NC_005261.1 + 137912 0.72 0.486427
Target:  5'- cUCGCGGgccccgcgaGCGGgcccggcuGCGGCGGCGGCUGc -3'
miRNA:   3'- aAGCGUCag-------CGCC--------UGCCGCUGUUGAC- -5'
23559 3' -57 NC_005261.1 + 136897 0.68 0.738313
Target:  5'- -gUGCAGgCGCGGcGCGGCGGCGu--- -3'
miRNA:   3'- aaGCGUCaGCGCC-UGCCGCUGUugac -5'
23559 3' -57 NC_005261.1 + 136838 0.68 0.708506
Target:  5'- -cCGCGGcCGCGGcgccCGGCGugGcCUGg -3'
miRNA:   3'- aaGCGUCaGCGCCu---GCCGCugUuGAC- -5'
23559 3' -57 NC_005261.1 + 136429 0.7 0.616521
Target:  5'- gUCGCAGgcccccUCGCGGGCGucgcaggggcacGCGGCAGCc- -3'
miRNA:   3'- aAGCGUC------AGCGCCUGC------------CGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 136190 0.75 0.362695
Target:  5'- -cUGCGGcuggcCGCGGcGCGGCGGCGGCUGa -3'
miRNA:   3'- aaGCGUCa----GCGCC-UGCCGCUGUUGAC- -5'
23559 3' -57 NC_005261.1 + 135889 0.68 0.71852
Target:  5'- gUCGCAGaUCGCGGACccCGAgGACg- -3'
miRNA:   3'- aAGCGUC-AGCGCCUGccGCUgUUGac -5'
23559 3' -57 NC_005261.1 + 135026 0.7 0.647371
Target:  5'- -aCGCGGcCGCGG-CGGCGAggcCGACg- -3'
miRNA:   3'- aaGCGUCaGCGCCuGCCGCU---GUUGac -5'
23559 3' -57 NC_005261.1 + 134542 0.67 0.803264
Target:  5'- -gCGCAGacgugaccgccccUUGCuGGGCGGCGccGCGGCUGc -3'
miRNA:   3'- aaGCGUC-------------AGCG-CCUGCCGC--UGUUGAC- -5'
23559 3' -57 NC_005261.1 + 134474 0.66 0.838524
Target:  5'- -cCGCcaUCGUGGGCGGCGuCGucgcGCUGc -3'
miRNA:   3'- aaGCGucAGCGCCUGCCGCuGU----UGAC- -5'
23559 3' -57 NC_005261.1 + 134361 0.7 0.637089
Target:  5'- -cCGCcG-CGCGGGgGGCGGCGccGCUGg -3'
miRNA:   3'- aaGCGuCaGCGCCUgCCGCUGU--UGAC- -5'
23559 3' -57 NC_005261.1 + 134212 0.72 0.505739
Target:  5'- -gCGCgGGUCGCGG-CGGCcGGCAGCg- -3'
miRNA:   3'- aaGCG-UCAGCGCCuGCCG-CUGUUGac -5'
23559 3' -57 NC_005261.1 + 133313 0.69 0.678111
Target:  5'- cUCGCGGcCGCGG-CGGaGGCAGCc- -3'
miRNA:   3'- aAGCGUCaGCGCCuGCCgCUGUUGac -5'
23559 3' -57 NC_005261.1 + 132171 0.66 0.821689
Target:  5'- -cUGCAGgcagCGCGGGCGGgGGCccGCa- -3'
miRNA:   3'- aaGCGUCa---GCGCCUGCCgCUGu-UGac -5'
23559 3' -57 NC_005261.1 + 132090 0.68 0.71852
Target:  5'- -cCGCuGcCGCGGAgGGCGGCcGCg- -3'
miRNA:   3'- aaGCGuCaGCGCCUgCCGCUGuUGac -5'
23559 3' -57 NC_005261.1 + 131995 1.06 0.002932
Target:  5'- cUUCGCAGUCGCGGACGGCGACAACUGg -3'
miRNA:   3'- -AAGCGUCAGCGCCUGCCGCUGUUGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.