miRNA display CGI


Results 1 - 20 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23559 3' -57 NC_005261.1 + 131995 1.06 0.002932
Target:  5'- cUUCGCAGUCGCGGACGGCGACAACUGg -3'
miRNA:   3'- -AAGCGUCAGCGCCUGCCGCUGUUGAC- -5'
23559 3' -57 NC_005261.1 + 99797 0.8 0.172498
Target:  5'- gUCGCGG-CGCGGAUGGCGaACAGCg- -3'
miRNA:   3'- aAGCGUCaGCGCCUGCCGC-UGUUGac -5'
23559 3' -57 NC_005261.1 + 34991 0.8 0.186095
Target:  5'- -aCGCGGgcgCGCGGACGGCGGagGACUGc -3'
miRNA:   3'- aaGCGUCa--GCGCCUGCCGCUg-UUGAC- -5'
23559 3' -57 NC_005261.1 + 109954 0.78 0.232667
Target:  5'- -cCGCGGcCGCGG-CGGCGGCAACa- -3'
miRNA:   3'- aaGCGUCaGCGCCuGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 5437 0.78 0.232667
Target:  5'- -cCGCGGcCGCGG-CGGCGGCAACa- -3'
miRNA:   3'- aaGCGUCaGCGCCuGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 36212 0.77 0.281956
Target:  5'- gUUCGCGGcCuCGGGCGGCGGCgAGCUGc -3'
miRNA:   3'- -AAGCGUCaGcGCCUGCCGCUG-UUGAC- -5'
23559 3' -57 NC_005261.1 + 92485 0.77 0.288668
Target:  5'- -cCGCgAGcUCGCGGACGGCGGcCAGCUc -3'
miRNA:   3'- aaGCG-UC-AGCGCCUGCCGCU-GUUGAc -5'
23559 3' -57 NC_005261.1 + 29825 0.76 0.295506
Target:  5'- -aCGCAGgCGCGGugGcGCGGCuGCUGg -3'
miRNA:   3'- aaGCGUCaGCGCCugC-CGCUGuUGAC- -5'
23559 3' -57 NC_005261.1 + 82246 0.76 0.302468
Target:  5'- -cCGCGGUUGCcGAUGGCGACGGCg- -3'
miRNA:   3'- aaGCGUCAGCGcCUGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 34659 0.76 0.302468
Target:  5'- -gCGaCGG-CGCGGGCGGCGGCGGCa- -3'
miRNA:   3'- aaGC-GUCaGCGCCUGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 53572 0.76 0.316771
Target:  5'- -cCGCGGgCGCGGGCGGCGcCAGCc- -3'
miRNA:   3'- aaGCGUCaGCGCCUGCCGCuGUUGac -5'
23559 3' -57 NC_005261.1 + 61019 0.75 0.354729
Target:  5'- aUCGCcGUCGUgGGGCGGCaccgcGGCAGCUGg -3'
miRNA:   3'- aAGCGuCAGCG-CCUGCCG-----CUGUUGAC- -5'
23559 3' -57 NC_005261.1 + 26080 0.75 0.362695
Target:  5'- --aGCAGaCGCGGcaGCGGCGGCAGCa- -3'
miRNA:   3'- aagCGUCaGCGCC--UGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 119795 0.75 0.362695
Target:  5'- -cCGCAG-CGCGGAgcugGGCGGCAACUa -3'
miRNA:   3'- aaGCGUCaGCGCCUg---CCGCUGUUGAc -5'
23559 3' -57 NC_005261.1 + 31673 0.75 0.362695
Target:  5'- -cUGCGGcuggcCGCGGcGCGGCGGCGGCUGa -3'
miRNA:   3'- aaGCGUCa----GCGCC-UGCCGCUGUUGAC- -5'
23559 3' -57 NC_005261.1 + 136190 0.75 0.362695
Target:  5'- -cUGCGGcuggcCGCGGcGCGGCGGCGGCUGa -3'
miRNA:   3'- aaGCGUCa----GCGCC-UGCCGCUGUUGAC- -5'
23559 3' -57 NC_005261.1 + 130598 0.75 0.362695
Target:  5'- --aGCAGaCGCGGcaGCGGCGGCAGCa- -3'
miRNA:   3'- aagCGUCaGCGCC--UGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 55494 0.75 0.362695
Target:  5'- aUCGCAGacgggcuggCGCggcuGGACGGCGugGACUGc -3'
miRNA:   3'- aAGCGUCa--------GCG----CCUGCCGCugUUGAC- -5'
23559 3' -57 NC_005261.1 + 82840 0.75 0.370785
Target:  5'- -aUGCAGUCucaGCGG-CGGCGGCAGCg- -3'
miRNA:   3'- aaGCGUCAG---CGCCuGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 35522 0.74 0.395782
Target:  5'- -gCGCGGaCGCGGcggagACGGCGGCAGCg- -3'
miRNA:   3'- aaGCGUCaGCGCC-----UGCCGCUGUUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.