Results 1 - 20 of 286 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23559 | 3' | -57 | NC_005261.1 | + | 131995 | 1.06 | 0.002932 |
Target: 5'- cUUCGCAGUCGCGGACGGCGACAACUGg -3' miRNA: 3'- -AAGCGUCAGCGCCUGCCGCUGUUGAC- -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 99797 | 0.8 | 0.172498 |
Target: 5'- gUCGCGG-CGCGGAUGGCGaACAGCg- -3' miRNA: 3'- aAGCGUCaGCGCCUGCCGC-UGUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 34991 | 0.8 | 0.186095 |
Target: 5'- -aCGCGGgcgCGCGGACGGCGGagGACUGc -3' miRNA: 3'- aaGCGUCa--GCGCCUGCCGCUg-UUGAC- -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 109954 | 0.78 | 0.232667 |
Target: 5'- -cCGCGGcCGCGG-CGGCGGCAACa- -3' miRNA: 3'- aaGCGUCaGCGCCuGCCGCUGUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 5437 | 0.78 | 0.232667 |
Target: 5'- -cCGCGGcCGCGG-CGGCGGCAACa- -3' miRNA: 3'- aaGCGUCaGCGCCuGCCGCUGUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 36212 | 0.77 | 0.281956 |
Target: 5'- gUUCGCGGcCuCGGGCGGCGGCgAGCUGc -3' miRNA: 3'- -AAGCGUCaGcGCCUGCCGCUG-UUGAC- -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 92485 | 0.77 | 0.288668 |
Target: 5'- -cCGCgAGcUCGCGGACGGCGGcCAGCUc -3' miRNA: 3'- aaGCG-UC-AGCGCCUGCCGCU-GUUGAc -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 29825 | 0.76 | 0.295506 |
Target: 5'- -aCGCAGgCGCGGugGcGCGGCuGCUGg -3' miRNA: 3'- aaGCGUCaGCGCCugC-CGCUGuUGAC- -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 82246 | 0.76 | 0.302468 |
Target: 5'- -cCGCGGUUGCcGAUGGCGACGGCg- -3' miRNA: 3'- aaGCGUCAGCGcCUGCCGCUGUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 34659 | 0.76 | 0.302468 |
Target: 5'- -gCGaCGG-CGCGGGCGGCGGCGGCa- -3' miRNA: 3'- aaGC-GUCaGCGCCUGCCGCUGUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 53572 | 0.76 | 0.316771 |
Target: 5'- -cCGCGGgCGCGGGCGGCGcCAGCc- -3' miRNA: 3'- aaGCGUCaGCGCCUGCCGCuGUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 61019 | 0.75 | 0.354729 |
Target: 5'- aUCGCcGUCGUgGGGCGGCaccgcGGCAGCUGg -3' miRNA: 3'- aAGCGuCAGCG-CCUGCCG-----CUGUUGAC- -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 26080 | 0.75 | 0.362695 |
Target: 5'- --aGCAGaCGCGGcaGCGGCGGCAGCa- -3' miRNA: 3'- aagCGUCaGCGCC--UGCCGCUGUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 119795 | 0.75 | 0.362695 |
Target: 5'- -cCGCAG-CGCGGAgcugGGCGGCAACUa -3' miRNA: 3'- aaGCGUCaGCGCCUg---CCGCUGUUGAc -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 31673 | 0.75 | 0.362695 |
Target: 5'- -cUGCGGcuggcCGCGGcGCGGCGGCGGCUGa -3' miRNA: 3'- aaGCGUCa----GCGCC-UGCCGCUGUUGAC- -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 136190 | 0.75 | 0.362695 |
Target: 5'- -cUGCGGcuggcCGCGGcGCGGCGGCGGCUGa -3' miRNA: 3'- aaGCGUCa----GCGCC-UGCCGCUGUUGAC- -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 130598 | 0.75 | 0.362695 |
Target: 5'- --aGCAGaCGCGGcaGCGGCGGCAGCa- -3' miRNA: 3'- aagCGUCaGCGCC--UGCCGCUGUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 55494 | 0.75 | 0.362695 |
Target: 5'- aUCGCAGacgggcuggCGCggcuGGACGGCGugGACUGc -3' miRNA: 3'- aAGCGUCa--------GCG----CCUGCCGCugUUGAC- -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 82840 | 0.75 | 0.370785 |
Target: 5'- -aUGCAGUCucaGCGG-CGGCGGCAGCg- -3' miRNA: 3'- aaGCGUCAG---CGCCuGCCGCUGUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 35522 | 0.74 | 0.395782 |
Target: 5'- -gCGCGGaCGCGGcggagACGGCGGCAGCg- -3' miRNA: 3'- aaGCGUCaGCGCC-----UGCCGCUGUUGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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