miRNA display CGI


Results 21 - 40 of 286 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23559 3' -57 NC_005261.1 + 380 0.74 0.404353
Target:  5'- --gGCGGUgGCGGcgGCGGCGGCGGCg- -3'
miRNA:   3'- aagCGUCAgCGCC--UGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 104897 0.74 0.404353
Target:  5'- --gGCGGUgGCGGcgGCGGCGGCGGCg- -3'
miRNA:   3'- aagCGUCAgCGCC--UGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 138051 0.74 0.404353
Target:  5'- --gGCGGUgGCGGcgGCGGCGGCGGCg- -3'
miRNA:   3'- aagCGUCAgCGCC--UGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 30105 0.74 0.404353
Target:  5'- gUgGCGGUgGCGGGCGGCGu--GCUGu -3'
miRNA:   3'- aAgCGUCAgCGCCUGCCGCuguUGAC- -5'
23559 3' -57 NC_005261.1 + 93143 0.74 0.41304
Target:  5'- -gCGCAGgCGCGuGACGGaCGACGACg- -3'
miRNA:   3'- aaGCGUCaGCGC-CUGCC-GCUGUUGac -5'
23559 3' -57 NC_005261.1 + 84124 0.74 0.421841
Target:  5'- -cCGCGGUCguGCGGGCGGCcaucGGCAACg- -3'
miRNA:   3'- aaGCGUCAG--CGCCUGCCG----CUGUUGac -5'
23559 3' -57 NC_005261.1 + 91253 0.73 0.430754
Target:  5'- -gCGCuGcCgGCGGGCGGCGGCAGCg- -3'
miRNA:   3'- aaGCGuCaG-CGCCUGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 93719 0.73 0.430754
Target:  5'- cUCGUcGUCGUcGGCGGCGGCAGCg- -3'
miRNA:   3'- aAGCGuCAGCGcCUGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 38122 0.73 0.439777
Target:  5'- -gUGCGGgcgcCGCuGGGCGGCGGCAGCg- -3'
miRNA:   3'- aaGCGUCa---GCG-CCUGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 13961 0.73 0.448906
Target:  5'- gUCGCGGccgggcgCGCGGGCGGCGccgcGCGGCg- -3'
miRNA:   3'- aAGCGUCa------GCGCCUGCCGC----UGUUGac -5'
23559 3' -57 NC_005261.1 + 92307 0.73 0.458139
Target:  5'- -gCGCGG-CGgGGACGGCGAgGGCg- -3'
miRNA:   3'- aaGCGUCaGCgCCUGCCGCUgUUGac -5'
23559 3' -57 NC_005261.1 + 6138 0.73 0.458139
Target:  5'- gUCGCGGccgcccucCGCGGcaGCGGCGACGGCg- -3'
miRNA:   3'- aAGCGUCa-------GCGCC--UGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 75606 0.73 0.458139
Target:  5'- -cCGCGGaCGCGGACGGCgucgcguacgugGACGACg- -3'
miRNA:   3'- aaGCGUCaGCGCCUGCCG------------CUGUUGac -5'
23559 3' -57 NC_005261.1 + 46246 0.73 0.467473
Target:  5'- gUCGCAGgcCGCGG-CGGCGGCcGCg- -3'
miRNA:   3'- aAGCGUCa-GCGCCuGCCGCUGuUGac -5'
23559 3' -57 NC_005261.1 + 26598 0.73 0.467473
Target:  5'- --gGCGG-CgGCGGGCGGCGGCGGCa- -3'
miRNA:   3'- aagCGUCaG-CGCCUGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 6346 0.73 0.467473
Target:  5'- -gCGCcGUCGCGuGCGGCGGCGGCc- -3'
miRNA:   3'- aaGCGuCAGCGCcUGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 46740 0.73 0.467473
Target:  5'- -gCGCGGg-GCGGGCGGCGGCcGCg- -3'
miRNA:   3'- aaGCGUCagCGCCUGCCGCUGuUGac -5'
23559 3' -57 NC_005261.1 + 104785 0.73 0.467473
Target:  5'- -cUGCGGg-GCGGcuGCGGCGGCGGCUGc -3'
miRNA:   3'- aaGCGUCagCGCC--UGCCGCUGUUGAC- -5'
23559 3' -57 NC_005261.1 + 127303 0.72 0.486427
Target:  5'- -cCGCGagaaggggguuGUCGCGGcCGGCGGCGGCg- -3'
miRNA:   3'- aaGCGU-----------CAGCGCCuGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 108911 0.72 0.486427
Target:  5'- -aCGCGG-C-CGGGCGGCGGCGGCg- -3'
miRNA:   3'- aaGCGUCaGcGCCUGCCGCUGUUGac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.