miRNA display CGI


Results 21 - 40 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23559 3' -57 NC_005261.1 + 23171 0.66 0.84666
Target:  5'- --gGCAGgcgCGCcGGgGGCGACAGCg- -3'
miRNA:   3'- aagCGUCa--GCGcCUgCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 75852 0.66 0.84666
Target:  5'- -gCGCGG-CGCcGACGGCGGCcccGACg- -3'
miRNA:   3'- aaGCGUCaGCGcCUGCCGCUG---UUGac -5'
23559 3' -57 NC_005261.1 + 117590 0.66 0.845855
Target:  5'- --gGCGGU-GCGGGCGGCGAaccgggcCGGCa- -3'
miRNA:   3'- aagCGUCAgCGCCUGCCGCU-------GUUGac -5'
23559 3' -57 NC_005261.1 + 21396 0.66 0.838524
Target:  5'- cUUCGCGG-CGgGGACGGCcACGuACa- -3'
miRNA:   3'- -AAGCGUCaGCgCCUGCCGcUGU-UGac -5'
23559 3' -57 NC_005261.1 + 134474 0.66 0.838524
Target:  5'- -cCGCcaUCGUGGGCGGCGuCGucgcGCUGc -3'
miRNA:   3'- aaGCGucAGCGCCUGCCGCuGU----UGAC- -5'
23559 3' -57 NC_005261.1 + 71964 0.66 0.838524
Target:  5'- -cCGCGGgCGCccgguGGACGGCGu--GCUGg -3'
miRNA:   3'- aaGCGUCaGCG-----CCUGCCGCuguUGAC- -5'
23559 3' -57 NC_005261.1 + 4661 0.66 0.838524
Target:  5'- -gUGuCGGcCGCGG-CGGCGGCGGCc- -3'
miRNA:   3'- aaGC-GUCaGCGCCuGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 126952 0.66 0.838524
Target:  5'- -gCGcCGGgCGCGGG-GGCGGCAGCg- -3'
miRNA:   3'- aaGC-GUCaGCGCCUgCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 39882 0.66 0.838524
Target:  5'- --aGCAGgccgCGCGcGCGGCuguGCAGCUGg -3'
miRNA:   3'- aagCGUCa---GCGCcUGCCGc--UGUUGAC- -5'
23559 3' -57 NC_005261.1 + 13128 0.66 0.838524
Target:  5'- -cCGCGGggcgcgUGUGGuCGGUGACGGCg- -3'
miRNA:   3'- aaGCGUCa-----GCGCCuGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 34924 0.66 0.838524
Target:  5'- -gCGCGGccaCGCGGGgGGCGGcCGGCg- -3'
miRNA:   3'- aaGCGUCa--GCGCCUgCCGCU-GUUGac -5'
23559 3' -57 NC_005261.1 + 117455 0.66 0.838524
Target:  5'- -cUGCAGaaggUGCGGcagguCGGCGGCGACg- -3'
miRNA:   3'- aaGCGUCa---GCGCCu----GCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 11673 0.66 0.838524
Target:  5'- -cUGCAGcauuugCGCGcGACGGCGGCGcgUGg -3'
miRNA:   3'- aaGCGUCa-----GCGC-CUGCCGCUGUugAC- -5'
23559 3' -57 NC_005261.1 + 109178 0.66 0.838524
Target:  5'- -gUGuCGGcCGCGG-CGGCGGCGGCc- -3'
miRNA:   3'- aaGC-GUCaGCGCCuGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 45677 0.66 0.838524
Target:  5'- -gCGCGGggCGCGcGCGG-GACAGCUa -3'
miRNA:   3'- aaGCGUCa-GCGCcUGCCgCUGUUGAc -5'
23559 3' -57 NC_005261.1 + 80578 0.66 0.837699
Target:  5'- -gCGCAGucUCGgGGGCgugcucgGGCGGCuGCUGa -3'
miRNA:   3'- aaGCGUC--AGCgCCUG-------CCGCUGuUGAC- -5'
23559 3' -57 NC_005261.1 + 88172 0.66 0.83355
Target:  5'- -aCGCGGcagcgggcuucUCGCGG-CGGCGcugcaccgucgcgcgGCGGCUGg -3'
miRNA:   3'- aaGCGUC-----------AGCGCCuGCCGC---------------UGUUGAC- -5'
23559 3' -57 NC_005261.1 + 21486 0.66 0.832714
Target:  5'- -cCGCAGcgaggCGCcaaaggggcucagcaGGGCGGCGACGucggccaGCUGg -3'
miRNA:   3'- aaGCGUCa----GCG---------------CCUGCCGCUGU-------UGAC- -5'
23559 3' -57 NC_005261.1 + 85899 0.66 0.830197
Target:  5'- -gCGCGGcgggCGCcaaGGACGGCGAgGAgUGc -3'
miRNA:   3'- aaGCGUCa---GCG---CCUGCCGCUgUUgAC- -5'
23559 3' -57 NC_005261.1 + 35660 0.66 0.830197
Target:  5'- -cCGCcGaCGCGGACGGCGA-GGCg- -3'
miRNA:   3'- aaGCGuCaGCGCCUGCCGCUgUUGac -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.