miRNA display CGI


Results 41 - 60 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23559 3' -57 NC_005261.1 + 53220 0.66 0.830197
Target:  5'- -aCGCGGUCuggGUGGgauGCGGCGcCAGCUc -3'
miRNA:   3'- aaGCGUCAG---CGCC---UGCCGCuGUUGAc -5'
23559 3' -57 NC_005261.1 + 82172 0.66 0.830197
Target:  5'- -gCGCGG-CGCGGAaGGCG-CGGCg- -3'
miRNA:   3'- aaGCGUCaGCGCCUgCCGCuGUUGac -5'
23559 3' -57 NC_005261.1 + 69446 0.66 0.830197
Target:  5'- --gGCAG-CGCGGACGaGCuGCGGCg- -3'
miRNA:   3'- aagCGUCaGCGCCUGC-CGcUGUUGac -5'
23559 3' -57 NC_005261.1 + 85899 0.66 0.830197
Target:  5'- -gCGCGGcgggCGCcaaGGACGGCGAgGAgUGc -3'
miRNA:   3'- aaGCGUCa---GCG---CCUGCCGCUgUUgAC- -5'
23559 3' -57 NC_005261.1 + 35660 0.66 0.830197
Target:  5'- -cCGCcGaCGCGGACGGCGA-GGCg- -3'
miRNA:   3'- aaGCGuCaGCGCCUGCCGCUgUUGac -5'
23559 3' -57 NC_005261.1 + 115471 0.66 0.821689
Target:  5'- cUCGguguCGGUCGCGGGCucggccGCGGCGGCg- -3'
miRNA:   3'- aAGC----GUCAGCGCCUGc-----CGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 80677 0.66 0.821689
Target:  5'- -gCGCcGUCGCGGagcccguagaAgGGCGACAugUa -3'
miRNA:   3'- aaGCGuCAGCGCC----------UgCCGCUGUugAc -5'
23559 3' -57 NC_005261.1 + 129648 0.66 0.821689
Target:  5'- ---aCGGUgGCGG-CGGCGGCGGCa- -3'
miRNA:   3'- aagcGUCAgCGCCuGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 51099 0.66 0.821689
Target:  5'- cUCGCcGUCGCGGccuuugACGucGCGGCcGCUGu -3'
miRNA:   3'- aAGCGuCAGCGCC------UGC--CGCUGuUGAC- -5'
23559 3' -57 NC_005261.1 + 13505 0.66 0.821689
Target:  5'- -gCGCAGUCGcCGGcCGGCcGCAAa-- -3'
miRNA:   3'- aaGCGUCAGC-GCCuGCCGcUGUUgac -5'
23559 3' -57 NC_005261.1 + 132171 0.66 0.821689
Target:  5'- -cUGCAGgcagCGCGGGCGGgGGCccGCa- -3'
miRNA:   3'- aaGCGUCa---GCGCCUGCCgCUGu-UGac -5'
23559 3' -57 NC_005261.1 + 69694 0.66 0.821689
Target:  5'- --aGCAGggggcgCGCGGGCGcCGGCGGCg- -3'
miRNA:   3'- aagCGUCa-----GCGCCUGCcGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 79971 0.66 0.821689
Target:  5'- -gCGCGGcgagCGCGGcGCGGCG-CGGCa- -3'
miRNA:   3'- aaGCGUCa---GCGCC-UGCCGCuGUUGac -5'
23559 3' -57 NC_005261.1 + 79896 0.66 0.821689
Target:  5'- -gCGCGGcucCGCGaGGCGGUgcucgGGCGGCUGg -3'
miRNA:   3'- aaGCGUCa--GCGC-CUGCCG-----CUGUUGAC- -5'
23559 3' -57 NC_005261.1 + 74664 0.66 0.820828
Target:  5'- -gCGCAGgccggggaCGCGGACGcgaccgcGCGGgAGCUGg -3'
miRNA:   3'- aaGCGUCa-------GCGCCUGC-------CGCUgUUGAC- -5'
23559 3' -57 NC_005261.1 + 34068 0.66 0.819102
Target:  5'- -gCGCGGcgccCGCGGACGGCGcgguggccgaccugGCGGCc- -3'
miRNA:   3'- aaGCGUCa---GCGCCUGCCGC--------------UGUUGac -5'
23559 3' -57 NC_005261.1 + 69831 0.67 0.813006
Target:  5'- cUCGguGUCGUGGuaccCGGuCGugAGCa- -3'
miRNA:   3'- aAGCguCAGCGCCu---GCC-GCugUUGac -5'
23559 3' -57 NC_005261.1 + 130767 0.67 0.813006
Target:  5'- -cCGCGGaUgGgGGGgGGCGGCAACa- -3'
miRNA:   3'- aaGCGUC-AgCgCCUgCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 77128 0.67 0.813006
Target:  5'- -gCGCAG-CGCGcGAucuCGGCGGCcgAGCUGc -3'
miRNA:   3'- aaGCGUCaGCGC-CU---GCCGCUG--UUGAC- -5'
23559 3' -57 NC_005261.1 + 8096 0.67 0.813006
Target:  5'- -gUGCGcUCgGCGGACGGCGcGCGGCg- -3'
miRNA:   3'- aaGCGUcAG-CGCCUGCCGC-UGUUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.