miRNA display CGI


Results 61 - 80 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23559 3' -57 NC_005261.1 + 26250 0.67 0.813006
Target:  5'- -cCGCGGaUgGgGGGgGGCGGCAACa- -3'
miRNA:   3'- aaGCGUC-AgCgCCUgCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 38954 0.67 0.813006
Target:  5'- -cCGCGGcgCGCGGGCuGCGcaGCAACa- -3'
miRNA:   3'- aaGCGUCa-GCGCCUGcCGC--UGUUGac -5'
23559 3' -57 NC_005261.1 + 111717 0.67 0.813006
Target:  5'- -gCGCAGUCGCGGgucgACGaGCG-CGugUa -3'
miRNA:   3'- aaGCGUCAGCGCC----UGC-CGCuGUugAc -5'
23559 3' -57 NC_005261.1 + 8096 0.67 0.813006
Target:  5'- -gUGCGcUCgGCGGACGGCGcGCGGCg- -3'
miRNA:   3'- aaGCGUcAG-CGCCUGCCGC-UGUUGac -5'
23559 3' -57 NC_005261.1 + 130767 0.67 0.813006
Target:  5'- -cCGCGGaUgGgGGGgGGCGGCAACa- -3'
miRNA:   3'- aaGCGUC-AgCgCCUgCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 77128 0.67 0.813006
Target:  5'- -gCGCAG-CGCGcGAucuCGGCGGCcgAGCUGc -3'
miRNA:   3'- aaGCGUCaGCGC-CU---GCCGCUG--UUGAC- -5'
23559 3' -57 NC_005261.1 + 34941 0.67 0.812129
Target:  5'- cUUCGCGGggcugcgCGCGGcaccCGGCGcgcuggaGCGGCUGu -3'
miRNA:   3'- -AAGCGUCa------GCGCCu---GCCGC-------UGUUGAC- -5'
23559 3' -57 NC_005261.1 + 91214 0.67 0.807717
Target:  5'- gUCGCGGggcuggaccgccgcaUCGCGG-CGGCG-CGGCg- -3'
miRNA:   3'- aAGCGUC---------------AGCGCCuGCCGCuGUUGac -5'
23559 3' -57 NC_005261.1 + 43157 0.67 0.807717
Target:  5'- gUCGCGGUCGCGcucgcgggcgugcauGGCGGagGGCGGuCUGc -3'
miRNA:   3'- aAGCGUCAGCGC---------------CUGCCg-CUGUU-GAC- -5'
23559 3' -57 NC_005261.1 + 70776 0.67 0.804158
Target:  5'- -aCGCGGgcgUGCGGGCGGac-CGGCUGc -3'
miRNA:   3'- aaGCGUCa--GCGCCUGCCgcuGUUGAC- -5'
23559 3' -57 NC_005261.1 + 107164 0.67 0.804158
Target:  5'- -aCGCGG--GCGGGCaGCGGCGGCUc -3'
miRNA:   3'- aaGCGUCagCGCCUGcCGCUGUUGAc -5'
23559 3' -57 NC_005261.1 + 2647 0.67 0.804158
Target:  5'- -aCGCGG--GCGGGCaGCGGCGGCUc -3'
miRNA:   3'- aaGCGUCagCGCCUGcCGCUGUUGAc -5'
23559 3' -57 NC_005261.1 + 29479 0.67 0.804158
Target:  5'- -gCGCGGcgcgcCGCGGACGccGCGGCGccgccGCUGg -3'
miRNA:   3'- aaGCGUCa----GCGCCUGC--CGCUGU-----UGAC- -5'
23559 3' -57 NC_005261.1 + 59952 0.67 0.804158
Target:  5'- -cCGCAG-CGCGG-CGcGCGugAACg- -3'
miRNA:   3'- aaGCGUCaGCGCCuGC-CGCugUUGac -5'
23559 3' -57 NC_005261.1 + 37016 0.67 0.804158
Target:  5'- cUCGa---CGCGcuGCGGCGGCAGCUGg -3'
miRNA:   3'- aAGCgucaGCGCc-UGCCGCUGUUGAC- -5'
23559 3' -57 NC_005261.1 + 134542 0.67 0.803264
Target:  5'- -gCGCAGacgugaccgccccUUGCuGGGCGGCGccGCGGCUGc -3'
miRNA:   3'- aaGCGUC-------------AGCG-CCUGCCGC--UGUUGAC- -5'
23559 3' -57 NC_005261.1 + 87408 0.67 0.795152
Target:  5'- cUCGCGGcgccaagccgCGCGGAgcccgucaUGGCGGCGGCg- -3'
miRNA:   3'- aAGCGUCa---------GCGCCU--------GCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 18732 0.67 0.795152
Target:  5'- -gUGCuGUUgGCGGGCGGCGGCGccgGCg- -3'
miRNA:   3'- aaGCGuCAG-CGCCUGCCGCUGU---UGac -5'
23559 3' -57 NC_005261.1 + 22314 0.67 0.795152
Target:  5'- -gCGCGGaCGCGG-CGGCcGGC-GCUGa -3'
miRNA:   3'- aaGCGUCaGCGCCuGCCG-CUGuUGAC- -5'
23559 3' -57 NC_005261.1 + 73401 0.67 0.795152
Target:  5'- -cUGCAGcgCGCGGAccCGGCGcGCGGCg- -3'
miRNA:   3'- aaGCGUCa-GCGCCU--GCCGC-UGUUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.