miRNA display CGI


Results 41 - 60 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23559 3' -57 NC_005261.1 + 3592 0.66 0.84666
Target:  5'- -cCGC-GUCGCGGGCcGCGccaaGCAGCUc -3'
miRNA:   3'- aaGCGuCAGCGCCUGcCGC----UGUUGAc -5'
23559 3' -57 NC_005261.1 + 82172 0.66 0.830197
Target:  5'- -gCGCGG-CGCGGAaGGCG-CGGCg- -3'
miRNA:   3'- aaGCGUCaGCGCCUgCCGCuGUUGac -5'
23559 3' -57 NC_005261.1 + 127689 0.66 0.84666
Target:  5'- --gGCAGgcgCGCcGGgGGCGACAGCg- -3'
miRNA:   3'- aagCGUCa--GCGcCUgCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 13395 0.66 0.84666
Target:  5'- -aCGCGGUCuCGGAgCGGUagGGCGACg- -3'
miRNA:   3'- aaGCGUCAGcGCCU-GCCG--CUGUUGac -5'
23559 3' -57 NC_005261.1 + 12345 0.66 0.854601
Target:  5'- -gCGCGGcCGCcgccGCGGCGGCAACc- -3'
miRNA:   3'- aaGCGUCaGCGcc--UGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 76315 0.66 0.853816
Target:  5'- -cCGCuGUucaccucCGCGGuguaaGCGGCGGCAGCg- -3'
miRNA:   3'- aaGCGuCA-------GCGCC-----UGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 53653 0.66 0.854601
Target:  5'- aUCGCAGgcggccuggcCGCGGgucGCGGCcucGACAGCg- -3'
miRNA:   3'- aAGCGUCa---------GCGCC---UGCCG---CUGUUGac -5'
23559 3' -57 NC_005261.1 + 34068 0.66 0.819102
Target:  5'- -gCGCGGcgccCGCGGACGGCGcgguggccgaccugGCGGCc- -3'
miRNA:   3'- aaGCGUCa---GCGCCUGCCGC--------------UGUUGac -5'
23559 3' -57 NC_005261.1 + 108109 0.66 0.84666
Target:  5'- -cCGC-GUCGCGGGCcGCGccaaGCAGCUc -3'
miRNA:   3'- aaGCGuCAGCGCCUGcCGC----UGUUGAc -5'
23559 3' -57 NC_005261.1 + 52840 0.66 0.84986
Target:  5'- cUCGCGGgCGCcuaccagaagcccgaGGGCGGCGGCGcgaACa- -3'
miRNA:   3'- aAGCGUCaGCG---------------CCUGCCGCUGU---UGac -5'
23559 3' -57 NC_005261.1 + 79896 0.66 0.821689
Target:  5'- -gCGCGGcucCGCGaGGCGGUgcucgGGCGGCUGg -3'
miRNA:   3'- aaGCGUCa--GCGC-CUGCCG-----CUGUUGAC- -5'
23559 3' -57 NC_005261.1 + 11673 0.66 0.838524
Target:  5'- -cUGCAGcauuugCGCGcGACGGCGGCGcgUGg -3'
miRNA:   3'- aaGCGUCa-----GCGC-CUGCCGCUGUugAC- -5'
23559 3' -57 NC_005261.1 + 44338 0.66 0.84666
Target:  5'- -cCGCAGUCGC---UGGCGACcgcgcuGCUGa -3'
miRNA:   3'- aaGCGUCAGCGccuGCCGCUGu-----UGAC- -5'
23559 3' -57 NC_005261.1 + 121772 0.66 0.84666
Target:  5'- -gCGCGGUgggguggcCGCGGcCGGCGG--GCUGg -3'
miRNA:   3'- aaGCGUCA--------GCGCCuGCCGCUguUGAC- -5'
23559 3' -57 NC_005261.1 + 17958 0.66 0.84666
Target:  5'- -gCGCAGcCggGCGGGCGGUaGACGGCc- -3'
miRNA:   3'- aaGCGUCaG--CGCCUGCCG-CUGUUGac -5'
23559 3' -57 NC_005261.1 + 21396 0.66 0.838524
Target:  5'- cUUCGCGG-CGgGGACGGCcACGuACa- -3'
miRNA:   3'- -AAGCGUCaGCgCCUGCCGcUGU-UGac -5'
23559 3' -57 NC_005261.1 + 18732 0.67 0.795152
Target:  5'- -gUGCuGUUgGCGGGCGGCGGCGccgGCg- -3'
miRNA:   3'- aaGCGuCAG-CGCCUGCCGCUGU---UGac -5'
23559 3' -57 NC_005261.1 + 91214 0.67 0.807717
Target:  5'- gUCGCGGggcuggaccgccgcaUCGCGG-CGGCG-CGGCg- -3'
miRNA:   3'- aAGCGUC---------------AGCGCCuGCCGCuGUUGac -5'
23559 3' -57 NC_005261.1 + 107164 0.67 0.804158
Target:  5'- -aCGCGG--GCGGGCaGCGGCGGCUc -3'
miRNA:   3'- aaGCGUCagCGCCUGcCGCUGUUGAc -5'
23559 3' -57 NC_005261.1 + 43157 0.67 0.807717
Target:  5'- gUCGCGGUCGCGcucgcgggcgugcauGGCGGagGGCGGuCUGc -3'
miRNA:   3'- aAGCGUCAGCGC---------------CUGCCg-CUGUU-GAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.