miRNA display CGI


Results 41 - 60 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23559 3' -57 NC_005261.1 + 137912 0.72 0.486427
Target:  5'- cUCGCGGgccccgcgaGCGGgcccggcuGCGGCGGCGGCUGc -3'
miRNA:   3'- aAGCGUCag-------CGCC--------UGCCGCUGUUGAC- -5'
23559 3' -57 NC_005261.1 + 229 0.72 0.486427
Target:  5'- cUCGCGGgccccgcgaGCGGgcccggcuGCGGCGGCGGCUGc -3'
miRNA:   3'- aAGCGUCag-------CGCC--------UGCCGCUGUUGAC- -5'
23559 3' -57 NC_005261.1 + 108911 0.72 0.486427
Target:  5'- -aCGCGG-C-CGGGCGGCGGCGGCg- -3'
miRNA:   3'- aaGCGUCaGcGCCUGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 127303 0.72 0.486427
Target:  5'- -cCGCGagaaggggguuGUCGCGGcCGGCGGCGGCg- -3'
miRNA:   3'- aaGCGU-----------CAGCGCCuGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 38163 0.72 0.505739
Target:  5'- -gCGCGGcgCGCccccGGGCGGCGGCGGCg- -3'
miRNA:   3'- aaGCGUCa-GCG----CCUGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 134212 0.72 0.505739
Target:  5'- -gCGCgGGUCGCGG-CGGCcGGCAGCg- -3'
miRNA:   3'- aaGCG-UCAGCGCCuGCCG-CUGUUGac -5'
23559 3' -57 NC_005261.1 + 117142 0.72 0.515517
Target:  5'- -gCGCGGUCGCGGAacguauugccgGGCGACAGg-- -3'
miRNA:   3'- aaGCGUCAGCGCCUg----------CCGCUGUUgac -5'
23559 3' -57 NC_005261.1 + 94706 0.72 0.515517
Target:  5'- gUCGUAGUCGaGGACGGUcACGgcGCUGg -3'
miRNA:   3'- aAGCGUCAGCgCCUGCCGcUGU--UGAC- -5'
23559 3' -57 NC_005261.1 + 3550 0.72 0.515517
Target:  5'- gUCGCAGUCGuCGGGuccUGGCGGCuGgUGg -3'
miRNA:   3'- aAGCGUCAGC-GCCU---GCCGCUGuUgAC- -5'
23559 3' -57 NC_005261.1 + 93387 0.72 0.515517
Target:  5'- cUCGCGGcUGCGGcuGCGGCuGCGGCUGc -3'
miRNA:   3'- aAGCGUCaGCGCC--UGCCGcUGUUGAC- -5'
23559 3' -57 NC_005261.1 + 32239 0.72 0.524383
Target:  5'- -cUGCGGcuggccuUCGCGGGCGGCGuCGACg- -3'
miRNA:   3'- aaGCGUC-------AGCGCCUGCCGCuGUUGac -5'
23559 3' -57 NC_005261.1 + 5737 0.72 0.525371
Target:  5'- gUCGCGGUCGggcgcgucccaGGACGGCGAgGcGCUGc -3'
miRNA:   3'- aAGCGUCAGCg----------CCUGCCGCUgU-UGAC- -5'
23559 3' -57 NC_005261.1 + 138008 0.72 0.525371
Target:  5'- cUCGCGGggccCGCgagcaccagGGGCGGCGGCGGCa- -3'
miRNA:   3'- aAGCGUCa---GCG---------CCUGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 33491 0.72 0.525371
Target:  5'- cUCGCGGggccCGCgagcaccagGGGCGGCGGCGGCa- -3'
miRNA:   3'- aAGCGUCa---GCG---------CCUGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 74875 0.72 0.525371
Target:  5'- --gGCGGaCGCGG-CGGCGGCGGCg- -3'
miRNA:   3'- aagCGUCaGCGCCuGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 325 0.72 0.525371
Target:  5'- cUCGCGGggccCGCgagcaccagGGGCGGCGGCGGCa- -3'
miRNA:   3'- aAGCGUCa---GCG---------CCUGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 21197 0.72 0.525371
Target:  5'- -gCGCGGcCGCGGACGcuggccccggccGCGACGGCg- -3'
miRNA:   3'- aaGCGUCaGCGCCUGC------------CGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 29905 0.71 0.535296
Target:  5'- -gCGCgGGUCGCGGagcacGCGGCGGCcguCUGg -3'
miRNA:   3'- aaGCG-UCAGCGCC-----UGCCGCUGuu-GAC- -5'
23559 3' -57 NC_005261.1 + 34844 0.71 0.535296
Target:  5'- -gCGCAGgcggcCGCGGcGCGGCGGCGcgcggccgaGCUGg -3'
miRNA:   3'- aaGCGUCa----GCGCC-UGCCGCUGU---------UGAC- -5'
23559 3' -57 NC_005261.1 + 103595 0.71 0.545285
Target:  5'- cUCGCcGcCGUGGccGCGGCGGCAGCg- -3'
miRNA:   3'- aAGCGuCaGCGCC--UGCCGCUGUUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.