Results 41 - 60 of 286 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23559 | 3' | -57 | NC_005261.1 | + | 82246 | 0.76 | 0.302468 |
Target: 5'- -cCGCGGUUGCcGAUGGCGACGGCg- -3' miRNA: 3'- aaGCGUCAGCGcCUGCCGCUGUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 34659 | 0.76 | 0.302468 |
Target: 5'- -gCGaCGG-CGCGGGCGGCGGCGGCa- -3' miRNA: 3'- aaGC-GUCaGCGCCUGCCGCUGUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 29825 | 0.76 | 0.295506 |
Target: 5'- -aCGCAGgCGCGGugGcGCGGCuGCUGg -3' miRNA: 3'- aaGCGUCaGCGCCugC-CGCUGuUGAC- -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 36212 | 0.77 | 0.281956 |
Target: 5'- gUUCGCGGcCuCGGGCGGCGGCgAGCUGc -3' miRNA: 3'- -AAGCGUCaGcGCCUGCCGCUG-UUGAC- -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 109954 | 0.78 | 0.232667 |
Target: 5'- -cCGCGGcCGCGG-CGGCGGCAACa- -3' miRNA: 3'- aaGCGUCaGCGCCuGCCGCUGUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 93143 | 0.74 | 0.41304 |
Target: 5'- -gCGCAGgCGCGuGACGGaCGACGACg- -3' miRNA: 3'- aaGCGUCaGCGC-CUGCC-GCUGUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 84124 | 0.74 | 0.421841 |
Target: 5'- -cCGCGGUCguGCGGGCGGCcaucGGCAACg- -3' miRNA: 3'- aaGCGUCAG--CGCCUGCCG----CUGUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 94706 | 0.72 | 0.515517 |
Target: 5'- gUCGUAGUCGaGGACGGUcACGgcGCUGg -3' miRNA: 3'- aAGCGUCAGCgCCUGCCGcUGU--UGAC- -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 38163 | 0.72 | 0.505739 |
Target: 5'- -gCGCGGcgCGCccccGGGCGGCGGCGGCg- -3' miRNA: 3'- aaGCGUCa-GCG----CCUGCCGCUGUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 127303 | 0.72 | 0.486427 |
Target: 5'- -cCGCGagaaggggguuGUCGCGGcCGGCGGCGGCg- -3' miRNA: 3'- aaGCGU-----------CAGCGCCuGCCGCUGUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 108911 | 0.72 | 0.486427 |
Target: 5'- -aCGCGG-C-CGGGCGGCGGCGGCg- -3' miRNA: 3'- aaGCGUCaGcGCCUGCCGCUGUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 104785 | 0.73 | 0.467473 |
Target: 5'- -cUGCGGg-GCGGcuGCGGCGGCGGCUGc -3' miRNA: 3'- aaGCGUCagCGCC--UGCCGCUGUUGAC- -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 46740 | 0.73 | 0.467473 |
Target: 5'- -gCGCGGg-GCGGGCGGCGGCcGCg- -3' miRNA: 3'- aaGCGUCagCGCCUGCCGCUGuUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 6346 | 0.73 | 0.467473 |
Target: 5'- -gCGCcGUCGCGuGCGGCGGCGGCc- -3' miRNA: 3'- aaGCGuCAGCGCcUGCCGCUGUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 26598 | 0.73 | 0.467473 |
Target: 5'- --gGCGG-CgGCGGGCGGCGGCGGCa- -3' miRNA: 3'- aagCGUCaG-CGCCUGCCGCUGUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 6138 | 0.73 | 0.458139 |
Target: 5'- gUCGCGGccgcccucCGCGGcaGCGGCGACGGCg- -3' miRNA: 3'- aAGCGUCa-------GCGCC--UGCCGCUGUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 92307 | 0.73 | 0.458139 |
Target: 5'- -gCGCGG-CGgGGACGGCGAgGGCg- -3' miRNA: 3'- aaGCGUCaGCgCCUGCCGCUgUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 13961 | 0.73 | 0.448906 |
Target: 5'- gUCGCGGccgggcgCGCGGGCGGCGccgcGCGGCg- -3' miRNA: 3'- aAGCGUCa------GCGCCUGCCGC----UGUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 38122 | 0.73 | 0.439777 |
Target: 5'- -gUGCGGgcgcCGCuGGGCGGCGGCAGCg- -3' miRNA: 3'- aaGCGUCa---GCG-CCUGCCGCUGUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 91253 | 0.73 | 0.430754 |
Target: 5'- -gCGCuGcCgGCGGGCGGCGGCAGCg- -3' miRNA: 3'- aaGCGuCaG-CGCCUGCCGCUGUUGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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