miRNA display CGI


Results 41 - 60 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23559 3' -57 NC_005261.1 + 3592 0.66 0.84666
Target:  5'- -cCGC-GUCGCGGGCcGCGccaaGCAGCUc -3'
miRNA:   3'- aaGCGuCAGCGCCUGcCGC----UGUUGAc -5'
23559 3' -57 NC_005261.1 + 40300 0.67 0.793333
Target:  5'- -aCGUucucGUCGCGGAgGGCGGCuaauauaugcucGCUGa -3'
miRNA:   3'- aaGCGu---CAGCGCCUgCCGCUGu-----------UGAC- -5'
23559 3' -57 NC_005261.1 + 17168 0.68 0.735366
Target:  5'- -cCGCGG-CGCGGGCGugggcagcccugccGCGGCGGCg- -3'
miRNA:   3'- aaGCGUCaGCGCCUGC--------------CGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 541 0.68 0.748074
Target:  5'- --gGCAGg-GCGGACGGCGGCucgGCc- -3'
miRNA:   3'- aagCGUCagCGCCUGCCGCUGu--UGac -5'
23559 3' -57 NC_005261.1 + 2647 0.67 0.804158
Target:  5'- -aCGCGG--GCGGGCaGCGGCGGCUc -3'
miRNA:   3'- aaGCGUCagCGCCUGcCGCUGUUGAc -5'
23559 3' -57 NC_005261.1 + 126952 0.66 0.838524
Target:  5'- -gCGcCGGgCGCGGG-GGCGGCAGCg- -3'
miRNA:   3'- aaGC-GUCaGCGCCUgCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 35979 0.66 0.84666
Target:  5'- -cCGCuGUaGCGG-CGGCGGCucCUGg -3'
miRNA:   3'- aaGCGuCAgCGCCuGCCGCUGuuGAC- -5'
23559 3' -57 NC_005261.1 + 76315 0.66 0.853816
Target:  5'- -cCGCuGUucaccucCGCGGuguaaGCGGCGGCAGCg- -3'
miRNA:   3'- aaGCGuCA-------GCGCC-----UGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 69446 0.66 0.830197
Target:  5'- --gGCAG-CGCGGACGaGCuGCGGCg- -3'
miRNA:   3'- aagCGUCaGCGCCUGC-CGcUGUUGac -5'
23559 3' -57 NC_005261.1 + 74664 0.66 0.820828
Target:  5'- -gCGCAGgccggggaCGCGGACGcgaccgcGCGGgAGCUGg -3'
miRNA:   3'- aaGCGUCa-------GCGCCUGC-------CGCUgUUGAC- -5'
23559 3' -57 NC_005261.1 + 80677 0.66 0.821689
Target:  5'- -gCGCcGUCGCGGagcccguagaAgGGCGACAugUa -3'
miRNA:   3'- aaGCGuCAGCGCC----------UgCCGCUGUugAc -5'
23559 3' -57 NC_005261.1 + 29197 0.66 0.830197
Target:  5'- -cCGCGGcgcccgCGCGGGCG-CG-CGACUGg -3'
miRNA:   3'- aaGCGUCa-----GCGCCUGCcGCuGUUGAC- -5'
23559 3' -57 NC_005261.1 + 75852 0.66 0.84666
Target:  5'- -gCGCGG-CGCcGACGGCGGCcccGACg- -3'
miRNA:   3'- aaGCGUCaGCGcCUGCCGCUG---UUGac -5'
23559 3' -57 NC_005261.1 + 3823 0.67 0.767279
Target:  5'- -gCGCuGcCGCGGGCccgggcgcuGGCGGCAGCg- -3'
miRNA:   3'- aaGCGuCaGCGCCUG---------CCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 73490 0.67 0.776704
Target:  5'- -gCGCGGcgCGCGGacGCGGCGAgGAUc- -3'
miRNA:   3'- aaGCGUCa-GCGCC--UGCCGCUgUUGac -5'
23559 3' -57 NC_005261.1 + 111717 0.67 0.813006
Target:  5'- -gCGCAGUCGCGGgucgACGaGCG-CGugUa -3'
miRNA:   3'- aaGCGUCAGCGCC----UGC-CGCuGUugAc -5'
23559 3' -57 NC_005261.1 + 138212 0.68 0.748074
Target:  5'- --gGCAGg-GCGGACGGCGGCucgGCc- -3'
miRNA:   3'- aagCGUCagCGCCUGCCGCUGu--UGac -5'
23559 3' -57 NC_005261.1 + 131995 1.06 0.002932
Target:  5'- cUUCGCAGUCGCGGACGGCGACAACUGg -3'
miRNA:   3'- -AAGCGUCAGCGCCUGCCGCUGUUGAC- -5'
23559 3' -57 NC_005261.1 + 52474 0.68 0.728459
Target:  5'- -aUGCGGUUGCGG-CGGCauCGGCUGc -3'
miRNA:   3'- aaGCGUCAGCGCCuGCCGcuGUUGAC- -5'
23559 3' -57 NC_005261.1 + 13342 0.68 0.757733
Target:  5'- -gCGCGGccaGCGGuCGGCGGaGGCUGg -3'
miRNA:   3'- aaGCGUCag-CGCCuGCCGCUgUUGAC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.