Results 41 - 60 of 286 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23559 | 3' | -57 | NC_005261.1 | + | 3592 | 0.66 | 0.84666 |
Target: 5'- -cCGC-GUCGCGGGCcGCGccaaGCAGCUc -3' miRNA: 3'- aaGCGuCAGCGCCUGcCGC----UGUUGAc -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 40300 | 0.67 | 0.793333 |
Target: 5'- -aCGUucucGUCGCGGAgGGCGGCuaauauaugcucGCUGa -3' miRNA: 3'- aaGCGu---CAGCGCCUgCCGCUGu-----------UGAC- -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 17168 | 0.68 | 0.735366 |
Target: 5'- -cCGCGG-CGCGGGCGugggcagcccugccGCGGCGGCg- -3' miRNA: 3'- aaGCGUCaGCGCCUGC--------------CGCUGUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 541 | 0.68 | 0.748074 |
Target: 5'- --gGCAGg-GCGGACGGCGGCucgGCc- -3' miRNA: 3'- aagCGUCagCGCCUGCCGCUGu--UGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 2647 | 0.67 | 0.804158 |
Target: 5'- -aCGCGG--GCGGGCaGCGGCGGCUc -3' miRNA: 3'- aaGCGUCagCGCCUGcCGCUGUUGAc -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 126952 | 0.66 | 0.838524 |
Target: 5'- -gCGcCGGgCGCGGG-GGCGGCAGCg- -3' miRNA: 3'- aaGC-GUCaGCGCCUgCCGCUGUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 35979 | 0.66 | 0.84666 |
Target: 5'- -cCGCuGUaGCGG-CGGCGGCucCUGg -3' miRNA: 3'- aaGCGuCAgCGCCuGCCGCUGuuGAC- -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 76315 | 0.66 | 0.853816 |
Target: 5'- -cCGCuGUucaccucCGCGGuguaaGCGGCGGCAGCg- -3' miRNA: 3'- aaGCGuCA-------GCGCC-----UGCCGCUGUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 69446 | 0.66 | 0.830197 |
Target: 5'- --gGCAG-CGCGGACGaGCuGCGGCg- -3' miRNA: 3'- aagCGUCaGCGCCUGC-CGcUGUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 74664 | 0.66 | 0.820828 |
Target: 5'- -gCGCAGgccggggaCGCGGACGcgaccgcGCGGgAGCUGg -3' miRNA: 3'- aaGCGUCa-------GCGCCUGC-------CGCUgUUGAC- -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 80677 | 0.66 | 0.821689 |
Target: 5'- -gCGCcGUCGCGGagcccguagaAgGGCGACAugUa -3' miRNA: 3'- aaGCGuCAGCGCC----------UgCCGCUGUugAc -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 29197 | 0.66 | 0.830197 |
Target: 5'- -cCGCGGcgcccgCGCGGGCG-CG-CGACUGg -3' miRNA: 3'- aaGCGUCa-----GCGCCUGCcGCuGUUGAC- -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 75852 | 0.66 | 0.84666 |
Target: 5'- -gCGCGG-CGCcGACGGCGGCcccGACg- -3' miRNA: 3'- aaGCGUCaGCGcCUGCCGCUG---UUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 3823 | 0.67 | 0.767279 |
Target: 5'- -gCGCuGcCGCGGGCccgggcgcuGGCGGCAGCg- -3' miRNA: 3'- aaGCGuCaGCGCCUG---------CCGCUGUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 73490 | 0.67 | 0.776704 |
Target: 5'- -gCGCGGcgCGCGGacGCGGCGAgGAUc- -3' miRNA: 3'- aaGCGUCa-GCGCC--UGCCGCUgUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 111717 | 0.67 | 0.813006 |
Target: 5'- -gCGCAGUCGCGGgucgACGaGCG-CGugUa -3' miRNA: 3'- aaGCGUCAGCGCC----UGC-CGCuGUugAc -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 138212 | 0.68 | 0.748074 |
Target: 5'- --gGCAGg-GCGGACGGCGGCucgGCc- -3' miRNA: 3'- aagCGUCagCGCCUGCCGCUGu--UGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 131995 | 1.06 | 0.002932 |
Target: 5'- cUUCGCAGUCGCGGACGGCGACAACUGg -3' miRNA: 3'- -AAGCGUCAGCGCCUGCCGCUGUUGAC- -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 52474 | 0.68 | 0.728459 |
Target: 5'- -aUGCGGUUGCGG-CGGCauCGGCUGc -3' miRNA: 3'- aaGCGUCAGCGCCuGCCGcuGUUGAC- -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 13342 | 0.68 | 0.757733 |
Target: 5'- -gCGCGGccaGCGGuCGGCGGaGGCUGg -3' miRNA: 3'- aaGCGUCag-CGCCuGCCGCUgUUGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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