miRNA display CGI


Results 21 - 40 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23559 3' -57 NC_005261.1 + 57843 0.66 0.830197
Target:  5'- -cCGCGGgCGCGGGCGGCaaggccuCGGCg- -3'
miRNA:   3'- aaGCGUCaGCGCCUGCCGcu-----GUUGac -5'
23559 3' -57 NC_005261.1 + 29197 0.66 0.830197
Target:  5'- -cCGCGGcgcccgCGCGGGCG-CG-CGACUGg -3'
miRNA:   3'- aaGCGUCa-----GCGCCUGCcGCuGUUGAC- -5'
23559 3' -57 NC_005261.1 + 23171 0.66 0.84666
Target:  5'- --gGCAGgcgCGCcGGgGGCGACAGCg- -3'
miRNA:   3'- aagCGUCa--GCGcCUgCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 12345 0.66 0.854601
Target:  5'- -gCGCGGcCGCcgccGCGGCGGCAACc- -3'
miRNA:   3'- aaGCGUCaGCGcc--UGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 26250 0.67 0.813006
Target:  5'- -cCGCGGaUgGgGGGgGGCGGCAACa- -3'
miRNA:   3'- aaGCGUC-AgCgCCUgCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 115471 0.66 0.821689
Target:  5'- cUCGguguCGGUCGCGGGCucggccGCGGCGGCg- -3'
miRNA:   3'- aAGC----GUCAGCGCCUGc-----CGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 34924 0.66 0.838524
Target:  5'- -gCGCGGccaCGCGGGgGGCGGcCGGCg- -3'
miRNA:   3'- aaGCGUCa--GCGCCUgCCGCU-GUUGac -5'
23559 3' -57 NC_005261.1 + 35514 0.66 0.854601
Target:  5'- -cCGCuGgcaGCGGcauCGGCGGCAACa- -3'
miRNA:   3'- aaGCGuCag-CGCCu--GCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 129648 0.66 0.821689
Target:  5'- ---aCGGUgGCGG-CGGCGGCGGCa- -3'
miRNA:   3'- aagcGUCAgCGCCuGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 39334 0.66 0.854601
Target:  5'- -gCGCcGcCGCGGccaagcugcgcGCGGCGGCAGCc- -3'
miRNA:   3'- aaGCGuCaGCGCC-----------UGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 13128 0.66 0.838524
Target:  5'- -cCGCGGggcgcgUGUGGuCGGUGACGGCg- -3'
miRNA:   3'- aaGCGUCa-----GCGCCuGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 53220 0.66 0.830197
Target:  5'- -aCGCGGUCuggGUGGgauGCGGCGcCAGCUc -3'
miRNA:   3'- aaGCGUCAG---CGCC---UGCCGCuGUUGAc -5'
23559 3' -57 NC_005261.1 + 4661 0.66 0.838524
Target:  5'- -gUGuCGGcCGCGG-CGGCGGCGGCc- -3'
miRNA:   3'- aaGC-GUCaGCGCCuGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 13395 0.66 0.84666
Target:  5'- -aCGCGGUCuCGGAgCGGUagGGCGACg- -3'
miRNA:   3'- aaGCGUCAGcGCCU-GCCG--CUGUUGac -5'
23559 3' -57 NC_005261.1 + 122342 0.66 0.84666
Target:  5'- cUCGCAGagcUCGCcuGGCGGCcGCGGCUc -3'
miRNA:   3'- aAGCGUC---AGCGc-CUGCCGcUGUUGAc -5'
23559 3' -57 NC_005261.1 + 76315 0.66 0.853816
Target:  5'- -cCGCuGUucaccucCGCGGuguaaGCGGCGGCAGCg- -3'
miRNA:   3'- aaGCGuCA-------GCGCC-----UGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 134542 0.67 0.803264
Target:  5'- -gCGCAGacgugaccgccccUUGCuGGGCGGCGccGCGGCUGc -3'
miRNA:   3'- aaGCGUC-------------AGCG-CCUGCCGC--UGUUGAC- -5'
23559 3' -57 NC_005261.1 + 111717 0.67 0.813006
Target:  5'- -gCGCAGUCGCGGgucgACGaGCG-CGugUa -3'
miRNA:   3'- aaGCGUCAGCGCC----UGC-CGCuGUugAc -5'
23559 3' -57 NC_005261.1 + 69795 0.67 0.813006
Target:  5'- -cCGCGG-CGCGcGGCGGCG-CGAUa- -3'
miRNA:   3'- aaGCGUCaGCGC-CUGCCGCuGUUGac -5'
23559 3' -57 NC_005261.1 + 80677 0.66 0.821689
Target:  5'- -gCGCcGUCGCGGagcccguagaAgGGCGACAugUa -3'
miRNA:   3'- aaGCGuCAGCGCC----------UgCCGCUGUugAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.