miRNA display CGI


Results 21 - 40 of 286 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23559 3' -57 NC_005261.1 + 53653 0.66 0.854601
Target:  5'- aUCGCAGgcggccuggcCGCGGgucGCGGCcucGACAGCg- -3'
miRNA:   3'- aAGCGUCa---------GCGCC---UGCCG---CUGUUGac -5'
23559 3' -57 NC_005261.1 + 74664 0.66 0.820828
Target:  5'- -gCGCAGgccggggaCGCGGACGcgaccgcGCGGgAGCUGg -3'
miRNA:   3'- aaGCGUCa-------GCGCCUGC-------CGCUgUUGAC- -5'
23559 3' -57 NC_005261.1 + 13505 0.66 0.821689
Target:  5'- -gCGCAGUCGcCGGcCGGCcGCAAa-- -3'
miRNA:   3'- aaGCGUCAGC-GCCuGCCGcUGUUgac -5'
23559 3' -57 NC_005261.1 + 82172 0.66 0.830197
Target:  5'- -gCGCGG-CGCGGAaGGCG-CGGCg- -3'
miRNA:   3'- aaGCGUCaGCGCCUgCCGCuGUUGac -5'
23559 3' -57 NC_005261.1 + 134474 0.66 0.838524
Target:  5'- -cCGCcaUCGUGGGCGGCGuCGucgcGCUGc -3'
miRNA:   3'- aaGCGucAGCGCCUGCCGCuGU----UGAC- -5'
23559 3' -57 NC_005261.1 + 59952 0.67 0.804158
Target:  5'- -cCGCAG-CGCGG-CGcGCGugAACg- -3'
miRNA:   3'- aaGCGUCaGCGCCuGC-CGCugUUGac -5'
23559 3' -57 NC_005261.1 + 38954 0.67 0.813006
Target:  5'- -cCGCGGcgCGCGGGCuGCGcaGCAACa- -3'
miRNA:   3'- aaGCGUCa-GCGCCUGcCGC--UGUUGac -5'
23559 3' -57 NC_005261.1 + 121772 0.66 0.84666
Target:  5'- -gCGCGGUgggguggcCGCGGcCGGCGG--GCUGg -3'
miRNA:   3'- aaGCGUCA--------GCGCCuGCCGCUguUGAC- -5'
23559 3' -57 NC_005261.1 + 51099 0.66 0.821689
Target:  5'- cUCGCcGUCGCGGccuuugACGucGCGGCcGCUGu -3'
miRNA:   3'- aAGCGuCAGCGCC------UGC--CGCUGuUGAC- -5'
23559 3' -57 NC_005261.1 + 57843 0.66 0.830197
Target:  5'- -cCGCGGgCGCGGGCGGCaaggccuCGGCg- -3'
miRNA:   3'- aaGCGUCaGCGCCUGCCGcu-----GUUGac -5'
23559 3' -57 NC_005261.1 + 3592 0.66 0.84666
Target:  5'- -cCGC-GUCGCGGGCcGCGccaaGCAGCUc -3'
miRNA:   3'- aaGCGuCAGCGCCUGcCGC----UGUUGAc -5'
23559 3' -57 NC_005261.1 + 35979 0.66 0.84666
Target:  5'- -cCGCuGUaGCGG-CGGCGGCucCUGg -3'
miRNA:   3'- aaGCGuCAgCGCCuGCCGCUGuuGAC- -5'
23559 3' -57 NC_005261.1 + 40300 0.67 0.793333
Target:  5'- -aCGUucucGUCGCGGAgGGCGGCuaauauaugcucGCUGa -3'
miRNA:   3'- aaGCGu---CAGCGCCUgCCGCUGu-----------UGAC- -5'
23559 3' -57 NC_005261.1 + 2647 0.67 0.804158
Target:  5'- -aCGCGG--GCGGGCaGCGGCGGCUc -3'
miRNA:   3'- aaGCGUCagCGCCUGcCGCUGUUGAc -5'
23559 3' -57 NC_005261.1 + 80677 0.66 0.821689
Target:  5'- -gCGCcGUCGCGGagcccguagaAgGGCGACAugUa -3'
miRNA:   3'- aaGCGuCAGCGCC----------UgCCGCUGUugAc -5'
23559 3' -57 NC_005261.1 + 126952 0.66 0.838524
Target:  5'- -gCGcCGGgCGCGGG-GGCGGCAGCg- -3'
miRNA:   3'- aaGC-GUCaGCGCCUgCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 117455 0.66 0.838524
Target:  5'- -cUGCAGaaggUGCGGcagguCGGCGGCGACg- -3'
miRNA:   3'- aaGCGUCa---GCGCCu----GCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 76315 0.66 0.853816
Target:  5'- -cCGCuGUucaccucCGCGGuguaaGCGGCGGCAGCg- -3'
miRNA:   3'- aaGCGuCA-------GCGCC-----UGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 69446 0.66 0.830197
Target:  5'- --gGCAG-CGCGGACGaGCuGCGGCg- -3'
miRNA:   3'- aagCGUCaGCGCCUGC-CGcUGUUGac -5'
23559 3' -57 NC_005261.1 + 132171 0.66 0.821689
Target:  5'- -cUGCAGgcagCGCGGGCGGgGGCccGCa- -3'
miRNA:   3'- aaGCGUCa---GCGCCUGCCgCUGu-UGac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.