Results 21 - 40 of 286 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23559 | 3' | -57 | NC_005261.1 | + | 5817 | 0.66 | 0.84666 |
Target: 5'- --aGCAGgggugCGCGGGCcaggcgucGGCGGCGGCc- -3' miRNA: 3'- aagCGUCa----GCGCCUG--------CCGCUGUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 6138 | 0.73 | 0.458139 |
Target: 5'- gUCGCGGccgcccucCGCGGcaGCGGCGACGGCg- -3' miRNA: 3'- aAGCGUCa-------GCGCC--UGCCGCUGUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 6346 | 0.73 | 0.467473 |
Target: 5'- -gCGCcGUCGCGuGCGGCGGCGGCc- -3' miRNA: 3'- aaGCGuCAGCGCcUGCCGCUGUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 7027 | 0.69 | 0.688293 |
Target: 5'- -aCGCGGgcgCGCcGGCGGCGACcGCg- -3' miRNA: 3'- aaGCGUCa--GCGcCUGCCGCUGuUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 8096 | 0.67 | 0.813006 |
Target: 5'- -gUGCGcUCgGCGGACGGCGcGCGGCg- -3' miRNA: 3'- aaGCGUcAG-CGCCUGCCGC-UGUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 11153 | 0.68 | 0.71852 |
Target: 5'- aUUGCGGcggCGCGG-CGGCGGCAccaUGg -3' miRNA: 3'- aAGCGUCa--GCGCCuGCCGCUGUug-AC- -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 11673 | 0.66 | 0.838524 |
Target: 5'- -cUGCAGcauuugCGCGcGACGGCGGCGcgUGg -3' miRNA: 3'- aaGCGUCa-----GCGC-CUGCCGCUGUugAC- -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 12345 | 0.66 | 0.854601 |
Target: 5'- -gCGCGGcCGCcgccGCGGCGGCAACc- -3' miRNA: 3'- aaGCGUCaGCGcc--UGCCGCUGUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 13128 | 0.66 | 0.838524 |
Target: 5'- -cCGCGGggcgcgUGUGGuCGGUGACGGCg- -3' miRNA: 3'- aaGCGUCa-----GCGCCuGCCGCUGUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 13342 | 0.68 | 0.757733 |
Target: 5'- -gCGCGGccaGCGGuCGGCGGaGGCUGg -3' miRNA: 3'- aaGCGUCag-CGCCuGCCGCUgUUGAC- -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 13395 | 0.66 | 0.84666 |
Target: 5'- -aCGCGGUCuCGGAgCGGUagGGCGACg- -3' miRNA: 3'- aaGCGUCAGcGCCU-GCCG--CUGUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 13505 | 0.66 | 0.821689 |
Target: 5'- -gCGCAGUCGcCGGcCGGCcGCAAa-- -3' miRNA: 3'- aaGCGUCAGC-GCCuGCCGcUGUUgac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 13680 | 0.67 | 0.776704 |
Target: 5'- -gCGCGGggcgCGCGGGCGuGgGGCGgggcggGCUGg -3' miRNA: 3'- aaGCGUCa---GCGCCUGC-CgCUGU------UGAC- -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 13961 | 0.73 | 0.448906 |
Target: 5'- gUCGCGGccgggcgCGCGGGCGGCGccgcGCGGCg- -3' miRNA: 3'- aAGCGUCa------GCGCCUGCCGC----UGUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 14501 | 0.69 | 0.657641 |
Target: 5'- gUgGCGGU-GCGGACcGCGACGACg- -3' miRNA: 3'- aAgCGUCAgCGCCUGcCGCUGUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 15157 | 0.68 | 0.708506 |
Target: 5'- -cCGCGGUgGgGGugGGCGuaGCGGCg- -3' miRNA: 3'- aaGCGUCAgCgCCugCCGC--UGUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 15523 | 0.67 | 0.776704 |
Target: 5'- aUCGaCGG-CGCGGcCGGCGGCGcgGCg- -3' miRNA: 3'- aAGC-GUCaGCGCCuGCCGCUGU--UGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 16266 | 0.67 | 0.767279 |
Target: 5'- -gCGCuGgagCGCGGcACGGCGA--GCUGg -3' miRNA: 3'- aaGCGuCa--GCGCC-UGCCGCUguUGAC- -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 17168 | 0.68 | 0.735366 |
Target: 5'- -cCGCGG-CGCGGGCGugggcagcccugccGCGGCGGCg- -3' miRNA: 3'- aaGCGUCaGCGCCUGC--------------CGCUGUUGac -5' |
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23559 | 3' | -57 | NC_005261.1 | + | 17958 | 0.66 | 0.84666 |
Target: 5'- -gCGCAGcCggGCGGGCGGUaGACGGCc- -3' miRNA: 3'- aaGCGUCaG--CGCCUGCCG-CUGUUGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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