miRNA display CGI


Results 21 - 40 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23559 3' -57 NC_005261.1 + 5817 0.66 0.84666
Target:  5'- --aGCAGgggugCGCGGGCcaggcgucGGCGGCGGCc- -3'
miRNA:   3'- aagCGUCa----GCGCCUG--------CCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 6138 0.73 0.458139
Target:  5'- gUCGCGGccgcccucCGCGGcaGCGGCGACGGCg- -3'
miRNA:   3'- aAGCGUCa-------GCGCC--UGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 6346 0.73 0.467473
Target:  5'- -gCGCcGUCGCGuGCGGCGGCGGCc- -3'
miRNA:   3'- aaGCGuCAGCGCcUGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 7027 0.69 0.688293
Target:  5'- -aCGCGGgcgCGCcGGCGGCGACcGCg- -3'
miRNA:   3'- aaGCGUCa--GCGcCUGCCGCUGuUGac -5'
23559 3' -57 NC_005261.1 + 8096 0.67 0.813006
Target:  5'- -gUGCGcUCgGCGGACGGCGcGCGGCg- -3'
miRNA:   3'- aaGCGUcAG-CGCCUGCCGC-UGUUGac -5'
23559 3' -57 NC_005261.1 + 11153 0.68 0.71852
Target:  5'- aUUGCGGcggCGCGG-CGGCGGCAccaUGg -3'
miRNA:   3'- aAGCGUCa--GCGCCuGCCGCUGUug-AC- -5'
23559 3' -57 NC_005261.1 + 11673 0.66 0.838524
Target:  5'- -cUGCAGcauuugCGCGcGACGGCGGCGcgUGg -3'
miRNA:   3'- aaGCGUCa-----GCGC-CUGCCGCUGUugAC- -5'
23559 3' -57 NC_005261.1 + 12345 0.66 0.854601
Target:  5'- -gCGCGGcCGCcgccGCGGCGGCAACc- -3'
miRNA:   3'- aaGCGUCaGCGcc--UGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 13128 0.66 0.838524
Target:  5'- -cCGCGGggcgcgUGUGGuCGGUGACGGCg- -3'
miRNA:   3'- aaGCGUCa-----GCGCCuGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 13342 0.68 0.757733
Target:  5'- -gCGCGGccaGCGGuCGGCGGaGGCUGg -3'
miRNA:   3'- aaGCGUCag-CGCCuGCCGCUgUUGAC- -5'
23559 3' -57 NC_005261.1 + 13395 0.66 0.84666
Target:  5'- -aCGCGGUCuCGGAgCGGUagGGCGACg- -3'
miRNA:   3'- aaGCGUCAGcGCCU-GCCG--CUGUUGac -5'
23559 3' -57 NC_005261.1 + 13505 0.66 0.821689
Target:  5'- -gCGCAGUCGcCGGcCGGCcGCAAa-- -3'
miRNA:   3'- aaGCGUCAGC-GCCuGCCGcUGUUgac -5'
23559 3' -57 NC_005261.1 + 13680 0.67 0.776704
Target:  5'- -gCGCGGggcgCGCGGGCGuGgGGCGgggcggGCUGg -3'
miRNA:   3'- aaGCGUCa---GCGCCUGC-CgCUGU------UGAC- -5'
23559 3' -57 NC_005261.1 + 13961 0.73 0.448906
Target:  5'- gUCGCGGccgggcgCGCGGGCGGCGccgcGCGGCg- -3'
miRNA:   3'- aAGCGUCa------GCGCCUGCCGC----UGUUGac -5'
23559 3' -57 NC_005261.1 + 14501 0.69 0.657641
Target:  5'- gUgGCGGU-GCGGACcGCGACGACg- -3'
miRNA:   3'- aAgCGUCAgCGCCUGcCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 15157 0.68 0.708506
Target:  5'- -cCGCGGUgGgGGugGGCGuaGCGGCg- -3'
miRNA:   3'- aaGCGUCAgCgCCugCCGC--UGUUGac -5'
23559 3' -57 NC_005261.1 + 15523 0.67 0.776704
Target:  5'- aUCGaCGG-CGCGGcCGGCGGCGcgGCg- -3'
miRNA:   3'- aAGC-GUCaGCGCCuGCCGCUGU--UGac -5'
23559 3' -57 NC_005261.1 + 16266 0.67 0.767279
Target:  5'- -gCGCuGgagCGCGGcACGGCGA--GCUGg -3'
miRNA:   3'- aaGCGuCa--GCGCC-UGCCGCUguUGAC- -5'
23559 3' -57 NC_005261.1 + 17168 0.68 0.735366
Target:  5'- -cCGCGG-CGCGGGCGugggcagcccugccGCGGCGGCg- -3'
miRNA:   3'- aaGCGUCaGCGCCUGC--------------CGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 17958 0.66 0.84666
Target:  5'- -gCGCAGcCggGCGGGCGGUaGACGGCc- -3'
miRNA:   3'- aaGCGUCaG--CGCCUGCCG-CUGUUGac -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.