Results 61 - 80 of 286 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23559 | 3' | -57 | NC_005261.1 | + | 541 | 0.68 | 0.748074 |
Target: 5'- --gGCAGg-GCGGACGGCGGCucgGCc- -3' miRNA: 3'- aagCGUCagCGCCUGCCGCUGu--UGac -5' |
|||||||
23559 | 3' | -57 | NC_005261.1 | + | 4661 | 0.66 | 0.838524 |
Target: 5'- -gUGuCGGcCGCGG-CGGCGGCGGCc- -3' miRNA: 3'- aaGC-GUCaGCGCCuGCCGCUGUUGac -5' |
|||||||
23559 | 3' | -57 | NC_005261.1 | + | 59952 | 0.67 | 0.804158 |
Target: 5'- -cCGCAG-CGCGG-CGcGCGugAACg- -3' miRNA: 3'- aaGCGUCaGCGCCuGC-CGCugUUGac -5' |
|||||||
23559 | 3' | -57 | NC_005261.1 | + | 48441 | 0.67 | 0.785998 |
Target: 5'- cUCGCGGUgcguggCGCGGcCGGCGcgguCAACg- -3' miRNA: 3'- aAGCGUCA------GCGCCuGCCGCu---GUUGac -5' |
|||||||
23559 | 3' | -57 | NC_005261.1 | + | 53579 | 0.67 | 0.785998 |
Target: 5'- --aGCGGcCGCGGGcCGGCGGCGc--- -3' miRNA: 3'- aagCGUCaGCGCCU-GCCGCUGUugac -5' |
|||||||
23559 | 3' | -57 | NC_005261.1 | + | 23171 | 0.66 | 0.84666 |
Target: 5'- --gGCAGgcgCGCcGGgGGCGACAGCg- -3' miRNA: 3'- aagCGUCa--GCGcCUgCCGCUGUUGac -5' |
|||||||
23559 | 3' | -57 | NC_005261.1 | + | 82172 | 0.66 | 0.830197 |
Target: 5'- -gCGCGG-CGCGGAaGGCG-CGGCg- -3' miRNA: 3'- aaGCGUCaGCGCCUgCCGCuGUUGac -5' |
|||||||
23559 | 3' | -57 | NC_005261.1 | + | 13505 | 0.66 | 0.821689 |
Target: 5'- -gCGCAGUCGcCGGcCGGCcGCAAa-- -3' miRNA: 3'- aaGCGUCAGC-GCCuGCCGcUGUUgac -5' |
|||||||
23559 | 3' | -57 | NC_005261.1 | + | 69795 | 0.67 | 0.813006 |
Target: 5'- -cCGCGG-CGCGcGGCGGCG-CGAUa- -3' miRNA: 3'- aaGCGUCaGCGC-CUGCCGCuGUUGac -5' |
|||||||
23559 | 3' | -57 | NC_005261.1 | + | 57843 | 0.66 | 0.830197 |
Target: 5'- -cCGCGGgCGCGGGCGGCaaggccuCGGCg- -3' miRNA: 3'- aaGCGUCaGCGCCUGCCGcu-----GUUGac -5' |
|||||||
23559 | 3' | -57 | NC_005261.1 | + | 35979 | 0.66 | 0.84666 |
Target: 5'- -cCGCuGUaGCGG-CGGCGGCucCUGg -3' miRNA: 3'- aaGCGuCAgCGCCuGCCGCUGuuGAC- -5' |
|||||||
23559 | 3' | -57 | NC_005261.1 | + | 3592 | 0.66 | 0.84666 |
Target: 5'- -cCGC-GUCGCGGGCcGCGccaaGCAGCUc -3' miRNA: 3'- aaGCGuCAGCGCCUGcCGC----UGUUGAc -5' |
|||||||
23559 | 3' | -57 | NC_005261.1 | + | 17168 | 0.68 | 0.735366 |
Target: 5'- -cCGCGG-CGCGGGCGugggcagcccugccGCGGCGGCg- -3' miRNA: 3'- aaGCGUCaGCGCCUGC--------------CGCUGUUGac -5' |
|||||||
23559 | 3' | -57 | NC_005261.1 | + | 127668 | 0.68 | 0.708506 |
Target: 5'- gUUCGgGG-CG-GGACGGCGGCGGCc- -3' miRNA: 3'- -AAGCgUCaGCgCCUGCCGCUGUUGac -5' |
|||||||
23559 | 3' | -57 | NC_005261.1 | + | 43859 | 0.69 | 0.678111 |
Target: 5'- -aCGCGGcCGCGucguccucGGCGGCG-CGGCUGa -3' miRNA: 3'- aaGCGUCaGCGC--------CUGCCGCuGUUGAC- -5' |
|||||||
23559 | 3' | -57 | NC_005261.1 | + | 116165 | 0.69 | 0.667891 |
Target: 5'- -gCGCGGUCGCGGccGCGucccCGACGccGCUGg -3' miRNA: 3'- aaGCGUCAGCGCC--UGCc---GCUGU--UGAC- -5' |
|||||||
23559 | 3' | -57 | NC_005261.1 | + | 46804 | 0.68 | 0.708506 |
Target: 5'- gUCGCGGcgcgCGCGGAUGGCGcGCGccagGCg- -3' miRNA: 3'- aAGCGUCa---GCGCCUGCCGC-UGU----UGac -5' |
|||||||
23559 | 3' | -57 | NC_005261.1 | + | 35550 | 0.68 | 0.748074 |
Target: 5'- ---aCGGUgGCGG-CGGCGGCAGCa- -3' miRNA: 3'- aagcGUCAgCGCCuGCCGCUGUUGac -5' |
|||||||
23559 | 3' | -57 | NC_005261.1 | + | 38480 | 0.68 | 0.728459 |
Target: 5'- --aGCAGcacggcCGCGG-CGGCGuCGACUGg -3' miRNA: 3'- aagCGUCa-----GCGCCuGCCGCuGUUGAC- -5' |
|||||||
23559 | 3' | -57 | NC_005261.1 | + | 104184 | 0.68 | 0.71852 |
Target: 5'- -gCGCgGGUCGuCGGGCGG-GACGGCg- -3' miRNA: 3'- aaGCG-UCAGC-GCCUGCCgCUGUUGac -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home