miRNA display CGI


Results 61 - 80 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23559 3' -57 NC_005261.1 + 541 0.68 0.748074
Target:  5'- --gGCAGg-GCGGACGGCGGCucgGCc- -3'
miRNA:   3'- aagCGUCagCGCCUGCCGCUGu--UGac -5'
23559 3' -57 NC_005261.1 + 4661 0.66 0.838524
Target:  5'- -gUGuCGGcCGCGG-CGGCGGCGGCc- -3'
miRNA:   3'- aaGC-GUCaGCGCCuGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 59952 0.67 0.804158
Target:  5'- -cCGCAG-CGCGG-CGcGCGugAACg- -3'
miRNA:   3'- aaGCGUCaGCGCCuGC-CGCugUUGac -5'
23559 3' -57 NC_005261.1 + 48441 0.67 0.785998
Target:  5'- cUCGCGGUgcguggCGCGGcCGGCGcgguCAACg- -3'
miRNA:   3'- aAGCGUCA------GCGCCuGCCGCu---GUUGac -5'
23559 3' -57 NC_005261.1 + 53579 0.67 0.785998
Target:  5'- --aGCGGcCGCGGGcCGGCGGCGc--- -3'
miRNA:   3'- aagCGUCaGCGCCU-GCCGCUGUugac -5'
23559 3' -57 NC_005261.1 + 23171 0.66 0.84666
Target:  5'- --gGCAGgcgCGCcGGgGGCGACAGCg- -3'
miRNA:   3'- aagCGUCa--GCGcCUgCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 82172 0.66 0.830197
Target:  5'- -gCGCGG-CGCGGAaGGCG-CGGCg- -3'
miRNA:   3'- aaGCGUCaGCGCCUgCCGCuGUUGac -5'
23559 3' -57 NC_005261.1 + 13505 0.66 0.821689
Target:  5'- -gCGCAGUCGcCGGcCGGCcGCAAa-- -3'
miRNA:   3'- aaGCGUCAGC-GCCuGCCGcUGUUgac -5'
23559 3' -57 NC_005261.1 + 69795 0.67 0.813006
Target:  5'- -cCGCGG-CGCGcGGCGGCG-CGAUa- -3'
miRNA:   3'- aaGCGUCaGCGC-CUGCCGCuGUUGac -5'
23559 3' -57 NC_005261.1 + 57843 0.66 0.830197
Target:  5'- -cCGCGGgCGCGGGCGGCaaggccuCGGCg- -3'
miRNA:   3'- aaGCGUCaGCGCCUGCCGcu-----GUUGac -5'
23559 3' -57 NC_005261.1 + 35979 0.66 0.84666
Target:  5'- -cCGCuGUaGCGG-CGGCGGCucCUGg -3'
miRNA:   3'- aaGCGuCAgCGCCuGCCGCUGuuGAC- -5'
23559 3' -57 NC_005261.1 + 3592 0.66 0.84666
Target:  5'- -cCGC-GUCGCGGGCcGCGccaaGCAGCUc -3'
miRNA:   3'- aaGCGuCAGCGCCUGcCGC----UGUUGAc -5'
23559 3' -57 NC_005261.1 + 17168 0.68 0.735366
Target:  5'- -cCGCGG-CGCGGGCGugggcagcccugccGCGGCGGCg- -3'
miRNA:   3'- aaGCGUCaGCGCCUGC--------------CGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 127668 0.68 0.708506
Target:  5'- gUUCGgGG-CG-GGACGGCGGCGGCc- -3'
miRNA:   3'- -AAGCgUCaGCgCCUGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 43859 0.69 0.678111
Target:  5'- -aCGCGGcCGCGucguccucGGCGGCG-CGGCUGa -3'
miRNA:   3'- aaGCGUCaGCGC--------CUGCCGCuGUUGAC- -5'
23559 3' -57 NC_005261.1 + 116165 0.69 0.667891
Target:  5'- -gCGCGGUCGCGGccGCGucccCGACGccGCUGg -3'
miRNA:   3'- aaGCGUCAGCGCC--UGCc---GCUGU--UGAC- -5'
23559 3' -57 NC_005261.1 + 46804 0.68 0.708506
Target:  5'- gUCGCGGcgcgCGCGGAUGGCGcGCGccagGCg- -3'
miRNA:   3'- aAGCGUCa---GCGCCUGCCGC-UGU----UGac -5'
23559 3' -57 NC_005261.1 + 35550 0.68 0.748074
Target:  5'- ---aCGGUgGCGG-CGGCGGCAGCa- -3'
miRNA:   3'- aagcGUCAgCGCCuGCCGCUGUUGac -5'
23559 3' -57 NC_005261.1 + 38480 0.68 0.728459
Target:  5'- --aGCAGcacggcCGCGG-CGGCGuCGACUGg -3'
miRNA:   3'- aagCGUCa-----GCGCCuGCCGCuGUUGAC- -5'
23559 3' -57 NC_005261.1 + 104184 0.68 0.71852
Target:  5'- -gCGCgGGUCGuCGGGCGG-GACGGCg- -3'
miRNA:   3'- aaGCG-UCAGC-GCCUGCCgCUGUUGac -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.