miRNA display CGI


Results 21 - 40 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23559 5' -64.2 NC_005261.1 + 31197 0.73 0.205346
Target:  5'- aCGCGGcGCGUGGCgCGCCCUGcuCCuuGg -3'
miRNA:   3'- -GUGCC-UGCACCG-GCGGGACcuGGggC- -5'
23559 5' -64.2 NC_005261.1 + 80533 0.73 0.205346
Target:  5'- gAUGGACGaGGCCcugcugGCCCUGuGCCCCGc -3'
miRNA:   3'- gUGCCUGCaCCGG------CGGGACcUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 40684 0.73 0.220202
Target:  5'- gGCGGACG-GGCCgGCaCCgccgGGGCCgCCGa -3'
miRNA:   3'- gUGCCUGCaCCGG-CG-GGa---CCUGG-GGC- -5'
23559 5' -64.2 NC_005261.1 + 54908 0.73 0.220202
Target:  5'- gGCGGGCGgcgugGcGCCGCCCgagcugcacGACCCCGc -3'
miRNA:   3'- gUGCCUGCa----C-CGGCGGGac-------CUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 70785 0.73 0.225355
Target:  5'- uGCGGGCGgaccGGCUGCCCuuUGGGCgCUGg -3'
miRNA:   3'- gUGCCUGCa---CCGGCGGG--ACCUGgGGC- -5'
23559 5' -64.2 NC_005261.1 + 34665 0.72 0.230609
Target:  5'- gCGCGGGCGgcggcGGCaCGgggcCCCUGGGCCCgGg -3'
miRNA:   3'- -GUGCCUGCa----CCG-GC----GGGACCUGGGgC- -5'
23559 5' -64.2 NC_005261.1 + 70595 0.72 0.246993
Target:  5'- aGCGG-CGUGcGcCCGCCCgaagaGGGCCCCc -3'
miRNA:   3'- gUGCCuGCAC-C-GGCGGGa----CCUGGGGc -5'
23559 5' -64.2 NC_005261.1 + 118600 0.72 0.254963
Target:  5'- cCGCGGAgcucgcgcugucggcCGUugcccuGGCCGCCgcggcggcgcuCUGGGCCCCGg -3'
miRNA:   3'- -GUGCCU---------------GCA------CCGGCGG-----------GACCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 106463 0.72 0.258443
Target:  5'- gCGCGGGCGUccaagagcgccgGGCuccccucguCGCCCUGGACUuCCGa -3'
miRNA:   3'- -GUGCCUGCA------------CCG---------GCGGGACCUGG-GGC- -5'
23559 5' -64.2 NC_005261.1 + 105457 0.72 0.230079
Target:  5'- gCGCGGACacGGCCGCCCUcagcuccucggGGcgcgcggGCCCCGa -3'
miRNA:   3'- -GUGCCUGcaCCGGCGGGA-----------CC-------UGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 92166 0.72 0.240326
Target:  5'- cCACGaGGCGgcgcccuucccGCUGCCCUGGACCCUc -3'
miRNA:   3'- -GUGC-CUGCac---------CGGCGGGACCUGGGGc -5'
23559 5' -64.2 NC_005261.1 + 25264 0.72 0.235966
Target:  5'- gGCGGugGcGGCCGCCgUGGACagCGc -3'
miRNA:   3'- gUGCCugCaCCGGCGGgACCUGggGC- -5'
23559 5' -64.2 NC_005261.1 + 72821 0.72 0.235966
Target:  5'- cCGCGGACGUggagcugccggGGCCGCCCaac-CCCCGc -3'
miRNA:   3'- -GUGCCUGCA-----------CCGGCGGGaccuGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 20194 0.72 0.258443
Target:  5'- gCGCGGGCGUcGCgGCC--GGGCCCCGc -3'
miRNA:   3'- -GUGCCUGCAcCGgCGGgaCCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 32252 0.72 0.246993
Target:  5'- uCGCGGGCGgcgucgacGCCGCgCUGGGCgCCGa -3'
miRNA:   3'- -GUGCCUGCac------CGGCGgGACCUGgGGC- -5'
23559 5' -64.2 NC_005261.1 + 30211 0.72 0.241427
Target:  5'- aCGCGGACGUGcuGCCGCUgCUGGGgcugCCCGa -3'
miRNA:   3'- -GUGCCUGCAC--CGGCGG-GACCUg---GGGC- -5'
23559 5' -64.2 NC_005261.1 + 121926 0.72 0.241427
Target:  5'- --aGGGCccGGCCGCCgCUGGGCCCg- -3'
miRNA:   3'- gugCCUGcaCCGGCGG-GACCUGGGgc -5'
23559 5' -64.2 NC_005261.1 + 56094 0.71 0.276427
Target:  5'- gCACGGugGUGGacaaCCGCgCCUcGGACgCCa -3'
miRNA:   3'- -GUGCCugCACC----GGCG-GGA-CCUGgGGc -5'
23559 5' -64.2 NC_005261.1 + 13758 0.71 0.276427
Target:  5'- gGCGGcauguACGUGGgCGCCCcugaGGGCaCCCGg -3'
miRNA:   3'- gUGCC-----UGCACCgGCGGGa---CCUG-GGGC- -5'
23559 5' -64.2 NC_005261.1 + 137140 0.71 0.270324
Target:  5'- -uCGGACGacgagccgGGCuCGCCCUGGAgcggggccagccCCCCGc -3'
miRNA:   3'- guGCCUGCa-------CCG-GCGGGACCU------------GGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.