miRNA display CGI


Results 21 - 40 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23559 5' -64.2 NC_005261.1 + 10703 0.69 0.373497
Target:  5'- gGCGuuCGcgGGCCGCCUccGGGCCCCc -3'
miRNA:   3'- gUGCcuGCa-CCGGCGGGa-CCUGGGGc -5'
23559 5' -64.2 NC_005261.1 + 10946 0.69 0.3923
Target:  5'- uCGCGGggcccgcccccagacGCGUgGGCCGCCCc--GCCCCGc -3'
miRNA:   3'- -GUGCC---------------UGCA-CCGGCGGGaccUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 12442 0.69 0.389123
Target:  5'- uGCGG-CGUcGGCCGCgUcGGcGCCCCGg -3'
miRNA:   3'- gUGCCuGCA-CCGGCGgGaCC-UGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 12727 0.7 0.315364
Target:  5'- gCGCGGGCccgccGGCC-CCCUGGGCgggCCCGg -3'
miRNA:   3'- -GUGCCUGca---CCGGcGGGACCUG---GGGC- -5'
23559 5' -64.2 NC_005261.1 + 13736 0.68 0.447057
Target:  5'- -gUGGGCuUGGCCGCCCcucGCCCCc -3'
miRNA:   3'- guGCCUGcACCGGCGGGaccUGGGGc -5'
23559 5' -64.2 NC_005261.1 + 13758 0.71 0.276427
Target:  5'- gGCGGcauguACGUGGgCGCCCcugaGGGCaCCCGg -3'
miRNA:   3'- gUGCC-----UGCACCgGCGGGa---CCUG-GGGC- -5'
23559 5' -64.2 NC_005261.1 + 14533 0.68 0.405172
Target:  5'- gGCGGugGcgcGGCCGCCCgGcGACCaCGc -3'
miRNA:   3'- gUGCCugCa--CCGGCGGGaC-CUGGgGC- -5'
23559 5' -64.2 NC_005261.1 + 14725 0.7 0.343546
Target:  5'- aGCGGACGcGGCacuGCCgCUGGuGCgCCCGg -3'
miRNA:   3'- gUGCCUGCaCCGg--CGG-GACC-UG-GGGC- -5'
23559 5' -64.2 NC_005261.1 + 14986 0.67 0.473313
Target:  5'- gAUGGGCGgGGcCCGCgCCUGGGCggCCGc -3'
miRNA:   3'- gUGCCUGCaCC-GGCG-GGACCUGg-GGC- -5'
23559 5' -64.2 NC_005261.1 + 15141 0.71 0.288326
Target:  5'- cCGCGGcgaaaugGCGUGGCCGgCCgccucucgGGGCCUCa -3'
miRNA:   3'- -GUGCC-------UGCACCGGCgGGa-------CCUGGGGc -5'
23559 5' -64.2 NC_005261.1 + 15221 0.67 0.500322
Target:  5'- uCGCGGACGccacGGCCGCggCCguaGuGGCCCUGc -3'
miRNA:   3'- -GUGCCUGCa---CCGGCG--GGa--C-CUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 15943 0.66 0.527059
Target:  5'- uGCGGcaGCGgGGCCGCgCUGaugcuacGGCCCUGa -3'
miRNA:   3'- gUGCC--UGCaCCGGCGgGAC-------CUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 16963 0.71 0.26433
Target:  5'- -cCGGGC--GGCCGCCCcgucugcggcGGACCCCGa -3'
miRNA:   3'- guGCCUGcaCCGGCGGGa---------CCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 17173 0.69 0.397095
Target:  5'- gCGCGGGCGUGGgCaGCCCU--GCCgCGg -3'
miRNA:   3'- -GUGCCUGCACCgG-CGGGAccUGGgGC- -5'
23559 5' -64.2 NC_005261.1 + 19087 0.66 0.546749
Target:  5'- gCGCGGGCGgauccgagaUGGCCGCgCC-GcGGCCgCGg -3'
miRNA:   3'- -GUGCCUGC---------ACCGGCG-GGaC-CUGGgGC- -5'
23559 5' -64.2 NC_005261.1 + 19379 0.66 0.527991
Target:  5'- cCGCGGGCGc-GCCGCCCUccGCgCCGc -3'
miRNA:   3'- -GUGCCUGCacCGGCGGGAccUGgGGC- -5'
23559 5' -64.2 NC_005261.1 + 19544 0.66 0.565715
Target:  5'- cCACGccgcGCGUGcgccagcgcccGCCGCCCUcaGCCCCGa -3'
miRNA:   3'- -GUGCc---UGCAC-----------CGGCGGGAccUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 20192 0.66 0.546749
Target:  5'- aGCaGGCGaagcggGGCCGCCaaaGGCCCCGc -3'
miRNA:   3'- gUGcCUGCa-----CCGGCGGgacCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 20194 0.72 0.258443
Target:  5'- gCGCGGGCGUcGCgGCC--GGGCCCCGc -3'
miRNA:   3'- -GUGCCUGCAcCGgCGGgaCCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 21203 0.67 0.473313
Target:  5'- cCGCGGACGcUGGCCccgGCCgCgacggcGGGCCCg- -3'
miRNA:   3'- -GUGCCUGC-ACCGG---CGG-Ga-----CCUGGGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.