miRNA display CGI


Results 21 - 40 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23559 5' -64.2 NC_005261.1 + 132293 0.67 0.473313
Target:  5'- -cUGGACGUGGacuuuCGCCUUaGGcGCCCCa -3'
miRNA:   3'- guGCCUGCACCg----GCGGGA-CC-UGGGGc -5'
23559 5' -64.2 NC_005261.1 + 132030 1.08 0.000669
Target:  5'- uCACGGACGUGGCCGCCCUGGACCCCGg -3'
miRNA:   3'- -GUGCCUGCACCGGCGGGACCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 131971 0.69 0.350869
Target:  5'- gGCGG-CG-GGCCGCCCcgcgGGGcgggcaggcccuCCCCGg -3'
miRNA:   3'- gUGCCuGCaCCGGCGGGa---CCU------------GGGGC- -5'
23559 5' -64.2 NC_005261.1 + 131768 0.79 0.081116
Target:  5'- gGCGcGGCG-GGCgCGCCgCUGGGCCCCGa -3'
miRNA:   3'- gUGC-CUGCaCCG-GCGG-GACCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 128838 0.68 0.447057
Target:  5'- uCGCGcGGC-UGGCCGCCaC-GGuGCCCCGc -3'
miRNA:   3'- -GUGC-CUGcACCGGCGG-GaCC-UGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 128709 0.67 0.491241
Target:  5'- -uCGGGa--GGCgCGCCC-GGGCCCCGc -3'
miRNA:   3'- guGCCUgcaCCG-GCGGGaCCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 128572 0.7 0.315364
Target:  5'- cUugGGugGgcgcCCGCCCgagUGGGCCCCGc -3'
miRNA:   3'- -GugCCugCacc-GGCGGG---ACCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 127314 0.66 0.537342
Target:  5'- gGCGGugGggcccuGCCGCCCgcggGGGCCg-- -3'
miRNA:   3'- gUGCCugCac----CGGCGGGa---CCUGGggc -5'
23559 5' -64.2 NC_005261.1 + 127264 0.67 0.485829
Target:  5'- gCGCgGGGCGgcGGCgGCCCacgcgucugggggcGGGCCCCGc -3'
miRNA:   3'- -GUG-CCUGCa-CCGgCGGGa-------------CCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 125417 0.67 0.473313
Target:  5'- gCGCGGGCGgcgcucaGGCCGCCC---AUCCCu -3'
miRNA:   3'- -GUGCCUGCa------CCGGCGGGaccUGGGGc -5'
23559 5' -64.2 NC_005261.1 + 124940 0.68 0.405172
Target:  5'- cCGCGcGCGcUGuGCCggcGCCCUGGAgCCCGc -3'
miRNA:   3'- -GUGCcUGC-AC-CGG---CGGGACCUgGGGC- -5'
23559 5' -64.2 NC_005261.1 + 123941 0.68 0.438486
Target:  5'- -cCGGuCGgGGCCgGCCUUGG-CCCCa -3'
miRNA:   3'- guGCCuGCaCCGG-CGGGACCuGGGGc -5'
23559 5' -64.2 NC_005261.1 + 123221 0.68 0.42163
Target:  5'- gCGCGGccugcCGccuagcGGCCGCCCaggcgcGGGCCCCGc -3'
miRNA:   3'- -GUGCCu----GCa-----CCGGCGGGa-----CCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 123176 0.67 0.45572
Target:  5'- gCGCGGGCGUGGUgGCUggugugggcGGACCCa- -3'
miRNA:   3'- -GUGCCUGCACCGgCGGga-------CCUGGGgc -5'
23559 5' -64.2 NC_005261.1 + 122127 0.7 0.308597
Target:  5'- uCGCGuGCGUGGCCGCCgCcGGugCCg- -3'
miRNA:   3'- -GUGCcUGCACCGGCGG-GaCCugGGgc -5'
23559 5' -64.2 NC_005261.1 + 121995 0.69 0.397095
Target:  5'- gCGCGGACGUcGaCCGCCCcgaGGGCUggCCGa -3'
miRNA:   3'- -GUGCCUGCAcC-GGCGGGa--CCUGG--GGC- -5'
23559 5' -64.2 NC_005261.1 + 121926 0.72 0.241427
Target:  5'- --aGGGCccGGCCGCCgCUGGGCCCg- -3'
miRNA:   3'- gugCCUGcaCCGGCGG-GACCUGGGgc -5'
23559 5' -64.2 NC_005261.1 + 121268 0.69 0.365846
Target:  5'- cCGCaGACGgggcGGCCGCCCcGG-CCUCGc -3'
miRNA:   3'- -GUGcCUGCa---CCGGCGGGaCCuGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 121185 0.68 0.43001
Target:  5'- gCACGGGgcCGgGGCCggGCCCgGGGCCgCGg -3'
miRNA:   3'- -GUGCCU--GCaCCGG--CGGGaCCUGGgGC- -5'
23559 5' -64.2 NC_005261.1 + 120968 0.66 0.527991
Target:  5'- cCGCGGggcGCGU-GCCGCCgcaGGCCCCGu -3'
miRNA:   3'- -GUGCC---UGCAcCGGCGGgacCUGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.