miRNA display CGI


Results 41 - 60 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23559 5' -64.2 NC_005261.1 + 120588 0.7 0.336334
Target:  5'- aGCGu-CGUGGCCGUcgCCUGcGGCCUCGg -3'
miRNA:   3'- gUGCcuGCACCGGCG--GGAC-CUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 119586 0.68 0.447057
Target:  5'- gCGCGaGAcCGUGGCCGCCCcGuAUgCCGa -3'
miRNA:   3'- -GUGC-CU-GCACCGGCGGGaCcUGgGGC- -5'
23559 5' -64.2 NC_005261.1 + 119536 0.7 0.329233
Target:  5'- uCGCcGACGUGcGCCGCaacagCCUgGGGCCCCu -3'
miRNA:   3'- -GUGcCUGCAC-CGGCG-----GGA-CCUGGGGc -5'
23559 5' -64.2 NC_005261.1 + 118953 0.66 0.556209
Target:  5'- cCGCGGcgcACGUGGCCaagGUCCUGcACgCCGc -3'
miRNA:   3'- -GUGCC---UGCACCGG---CGGGACcUGgGGC- -5'
23559 5' -64.2 NC_005261.1 + 118851 0.68 0.447057
Target:  5'- gCGCGGAgGgcGGCgCGCCC-GcGGCCCUGg -3'
miRNA:   3'- -GUGCCUgCa-CCG-GCGGGaC-CUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 118600 0.72 0.254963
Target:  5'- cCGCGGAgcucgcgcugucggcCGUugcccuGGCCGCCgcggcggcgcuCUGGGCCCCGg -3'
miRNA:   3'- -GUGCCU---------------GCA------CCGGCGG-----------GACCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 117691 0.66 0.565715
Target:  5'- cCGCGG-CGaGGCCgGCCCUGaGGCCg-- -3'
miRNA:   3'- -GUGCCuGCaCCGG-CGGGAC-CUGGggc -5'
23559 5' -64.2 NC_005261.1 + 117165 0.67 0.491241
Target:  5'- uGCaGGC--GGUCGCCaaGGACCCCGg -3'
miRNA:   3'- gUGcCUGcaCCGGCGGgaCCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 116723 0.7 0.343546
Target:  5'- gGCcGACGUcGCCGCCCUGcugaGCCCCu -3'
miRNA:   3'- gUGcCUGCAcCGGCGGGACc---UGGGGc -5'
23559 5' -64.2 NC_005261.1 + 115220 0.69 0.373497
Target:  5'- gGCGuuCGcgGGCCGCCUccGGGCCCCc -3'
miRNA:   3'- gUGCcuGCa-CCGGCGGGa-CCUGGGGc -5'
23559 5' -64.2 NC_005261.1 + 115014 0.69 0.388332
Target:  5'- -cCGGcuuuugcGCGcGGCCGCCgCUgcGGGCCCCGc -3'
miRNA:   3'- guGCC-------UGCaCCGGCGG-GA--CCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 114990 0.71 0.295397
Target:  5'- gGCGGGCc-GGCCGCCgc-GGCCCCGg -3'
miRNA:   3'- gUGCCUGcaCCGGCGGgacCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 114774 0.67 0.45485
Target:  5'- cCGCGGGCcUGGCgccuucUGCCCUGaGgacuggcGCCCCGa -3'
miRNA:   3'- -GUGCCUGcACCG------GCGGGAC-C-------UGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 113557 0.66 0.560006
Target:  5'- gCGCuGGACcgcgagcaguggucgGUGGCCGCCgcgCUGGGCgaccucgcgCCCGg -3'
miRNA:   3'- -GUG-CCUG---------------CACCGGCGG---GACCUG---------GGGC- -5'
23559 5' -64.2 NC_005261.1 + 113288 0.68 0.447057
Target:  5'- --aGGGCGUGguccucucgcuGCCGCgggCCUGGGCCCgGc -3'
miRNA:   3'- gugCCUGCAC-----------CGGCG---GGACCUGGGgC- -5'
23559 5' -64.2 NC_005261.1 + 113044 0.66 0.518702
Target:  5'- gCGCGcGGCGUGGCgCGCCaccgcucgCUGGGCaUCGg -3'
miRNA:   3'- -GUGC-CUGCACCG-GCGG--------GACCUGgGGC- -5'
23559 5' -64.2 NC_005261.1 + 110832 0.66 0.556209
Target:  5'- cCGCGGACGaguuuccgcUGcCCGCCCUGGcgaacaGCCgCGc -3'
miRNA:   3'- -GUGCCUGC---------ACcGGCGGGACC------UGGgGC- -5'
23559 5' -64.2 NC_005261.1 + 110607 0.69 0.365846
Target:  5'- -cUGGACGUGGaCGCCgagcugcggCUGGAgCCCGc -3'
miRNA:   3'- guGCCUGCACCgGCGG---------GACCUgGGGC- -5'
23559 5' -64.2 NC_005261.1 + 109883 0.73 0.225355
Target:  5'- cCGCGGGCGggcgccccggGGCUacaGcCCCUGGACCgCCGg -3'
miRNA:   3'- -GUGCCUGCa---------CCGG---C-GGGACCUGG-GGC- -5'
23559 5' -64.2 NC_005261.1 + 109684 0.69 0.381257
Target:  5'- aGCGGACGagggacgaUGGCCGCgCCUaaugGGAgCUCGa -3'
miRNA:   3'- gUGCCUGC--------ACCGGCG-GGA----CCUgGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.